Hb_002960_130

Information

Type -
Description -
Location Contig2960: 114535-115691
Sequence    

Annotation

kegg
ID egr:104431947
description rac-like GTP-binding protein ARAC3
nr
ID KJB47674.1
description hypothetical protein B456_008G036100 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M0V3U8
description Uncharacterized protein (Fragment) OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein rho1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30970: 114237-127135 , PASA_asmbl_30971: 114302-126200 , PASA_asmbl_30972: 114793-127133
cDNA
(Sanger)
(ID:Location)		 006_K11.ab1: 114728-127048 , 026_J18.ab1: 114873-127048 , 033_C19.ab1: 114751-127135

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_130 0.0 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
2 Hb_019181_030 0.1215578938 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
3 Hb_001747_030 0.1268925886 - - hypothetical protein F383_08210 [Gossypium arboreum]
4 Hb_001208_040 0.1291057541 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
5 Hb_000683_100 0.1301277673 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
6 Hb_001584_240 0.1311826471 - - ADP-ribosylation factor [Gossypium barbadense]
7 Hb_000217_020 0.1321369643 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
8 Hb_004116_020 0.1330256947 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
9 Hb_000016_060 0.1367608685 - - mads box protein, putative [Ricinus communis]
10 Hb_001969_020 0.140871403 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
11 Hb_006452_110 0.1431784775 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
12 Hb_007390_020 0.1431916894 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
13 Hb_000004_010 0.147587418 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
14 Hb_083380_020 0.1476164865 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
15 Hb_004032_030 0.152979143 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
16 Hb_010368_050 0.1557977172 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
17 Hb_013749_010 0.156723001 - - conserved hypothetical protein [Ricinus communis]
18 Hb_166574_010 0.1569419725 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
19 Hb_004195_080 0.1594560672 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
20 Hb_004176_070 0.1605843589 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_130 Hb_002960_130 Hb_019181_030 Hb_019181_030 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_001208_040 Hb_001208_040 Hb_002960_130--Hb_001208_040 Hb_000683_100 Hb_000683_100 Hb_002960_130--Hb_000683_100 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020 Hb_002133_020 Hb_002133_020 Hb_001747_030--Hb_002133_020 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_000111_030 Hb_000111_030 Hb_001747_030--Hb_000111_030 Hb_001208_030 Hb_001208_030 Hb_001208_040--Hb_001208_030 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_001208_040--Hb_007390_020 Hb_001969_020 Hb_001969_020 Hb_000683_100--Hb_001969_020 Hb_000796_020 Hb_000796_020 Hb_000683_100--Hb_000796_020 Hb_148130_020 Hb_148130_020 Hb_000683_100--Hb_148130_020 Hb_010577_010 Hb_010577_010 Hb_000683_100--Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_000683_100--Hb_091349_010 Hb_000671_130 Hb_000671_130 Hb_001584_240--Hb_000671_130 Hb_001195_070 Hb_001195_070 Hb_001584_240--Hb_001195_070 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001584_240--Hb_001208_040 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.52 5.97299 39.1785 135.771 11.1822 42.7666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.1531 48.3915 27.1492 18.4545 26.2782

CAGE analysis