Hb_000111_030

Information

Type -
Description -
Location Contig111: 71118-72155
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_009598184.1
description PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_030 0.0 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
2 Hb_002388_010 0.114349633 - - -
3 Hb_130613_010 0.1225136187 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
4 Hb_001747_030 0.1258856556 - - hypothetical protein F383_08210 [Gossypium arboreum]
5 Hb_182713_020 0.1333469108 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
6 Hb_002344_130 0.1376232971 - - PREDICTED: copper transporter 5 [Jatropha curcas]
7 Hb_002192_090 0.151326505 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
8 Hb_001217_040 0.1588278694 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
9 Hb_001217_010 0.1595798617 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
10 Hb_001518_070 0.1603642381 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000481_050 0.1606839676 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
12 Hb_002133_020 0.1610103897 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004669_030 0.1644855815 - - -
14 Hb_133724_010 0.1696559917 - - conserved hypothetical protein [Ricinus communis]
15 Hb_075764_010 0.1712572475 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
16 Hb_000004_010 0.1735219431 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
17 Hb_011942_010 0.1751169348 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001195_410 0.1758875566 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
19 Hb_066913_010 0.1763603297 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
20 Hb_000125_020 0.1775194211 transcription factor TF Family: mTERF -

Gene co-expression network

sample Hb_000111_030 Hb_000111_030 Hb_002388_010 Hb_002388_010 Hb_000111_030--Hb_002388_010 Hb_130613_010 Hb_130613_010 Hb_000111_030--Hb_130613_010 Hb_001747_030 Hb_001747_030 Hb_000111_030--Hb_001747_030 Hb_182713_020 Hb_182713_020 Hb_000111_030--Hb_182713_020 Hb_002344_130 Hb_002344_130 Hb_000111_030--Hb_002344_130 Hb_002192_090 Hb_002192_090 Hb_000111_030--Hb_002192_090 Hb_002388_010--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_002388_010--Hb_133724_010 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_130613_010--Hb_133724_010 Hb_011671_480 Hb_011671_480 Hb_130613_010--Hb_011671_480 Hb_000363_330 Hb_000363_330 Hb_130613_010--Hb_000363_330 Hb_001911_040 Hb_001911_040 Hb_130613_010--Hb_001911_040 Hb_005686_120 Hb_005686_120 Hb_130613_010--Hb_005686_120 Hb_002133_020 Hb_002133_020 Hb_001747_030--Hb_002133_020 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130 Hb_188313_010 Hb_188313_010 Hb_182713_020--Hb_188313_010 Hb_013394_100 Hb_013394_100 Hb_182713_020--Hb_013394_100 Hb_009083_030 Hb_009083_030 Hb_182713_020--Hb_009083_030 Hb_182713_020--Hb_073799_010 Hb_011287_040 Hb_011287_040 Hb_182713_020--Hb_011287_040 Hb_000003_540 Hb_000003_540 Hb_002344_130--Hb_000003_540 Hb_000023_290 Hb_000023_290 Hb_002344_130--Hb_000023_290 Hb_000245_080 Hb_000245_080 Hb_002344_130--Hb_000245_080 Hb_145629_010 Hb_145629_010 Hb_002344_130--Hb_145629_010 Hb_002344_130--Hb_001747_030 Hb_002192_090--Hb_133724_010 Hb_001518_070 Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_002192_090--Hb_001747_030 Hb_000053_030 Hb_000053_030 Hb_002192_090--Hb_000053_030 Hb_099878_050 Hb_099878_050 Hb_002192_090--Hb_099878_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39518 3.14565 2.30471 15.7186 2.73792 5.58898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80072 5.52921 1.50028 1.54817 1.0802

CAGE analysis