Hb_133724_010

Information

Type -
Description -
Location Contig133724: 710-1175
Sequence    

Annotation

kegg
ID rcu:RCOM_1597990
description hypothetical protein
nr
ID XP_002510535.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R892
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1597990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133724_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002192_090 0.0879929111 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
3 Hb_002388_010 0.1269328404 - - -
4 Hb_099878_050 0.129445738 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
5 Hb_001829_040 0.1307479743 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
6 Hb_130613_010 0.1341793688 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
7 Hb_001518_070 0.137034496 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004883_050 0.1411339327 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
9 Hb_146675_010 0.1478426481 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
10 Hb_066913_010 0.1513977696 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
11 Hb_003925_070 0.1528243648 - - ATOZI1, putative [Ricinus communis]
12 Hb_011942_010 0.1554076193 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005686_120 0.1556856537 - - -
14 Hb_001747_030 0.155916562 - - hypothetical protein F383_08210 [Gossypium arboreum]
15 Hb_075764_010 0.1569384549 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
16 Hb_002687_080 0.1579558649 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
17 Hb_085972_010 0.1603487881 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
18 Hb_001545_050 0.1661667356 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
19 Hb_013749_010 0.1689264874 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000053_030 0.1694901746 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_133724_010 Hb_133724_010 Hb_002192_090 Hb_002192_090 Hb_133724_010--Hb_002192_090 Hb_002388_010 Hb_002388_010 Hb_133724_010--Hb_002388_010 Hb_099878_050 Hb_099878_050 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_001518_070 Hb_001518_070 Hb_133724_010--Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_002192_090--Hb_002388_010 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_000053_030 Hb_000053_030 Hb_002192_090--Hb_000053_030 Hb_002192_090--Hb_099878_050 Hb_000111_030 Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_011671_480 Hb_011671_480 Hb_001829_040--Hb_011671_480 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_000260_720 Hb_000260_720 Hb_001829_040--Hb_000260_720 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_130613_010--Hb_000111_030 Hb_130613_010--Hb_011671_480 Hb_000363_330 Hb_000363_330 Hb_130613_010--Hb_000363_330 Hb_001911_040 Hb_001911_040 Hb_130613_010--Hb_001911_040 Hb_130613_010--Hb_005686_120 Hb_001518_070--Hb_000053_030 Hb_010964_020 Hb_010964_020 Hb_001518_070--Hb_010964_020 Hb_001518_070--Hb_002388_010 Hb_001518_070--Hb_000111_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.7977 8.60122 11.975 32.4412 3.7031 23.7056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.36488 12.4034 4.09786 5.59767 2.41261

CAGE analysis