Hb_002983_080

Information

Type -
Description -
Location Contig2983: 57994-58875
Sequence    

Annotation

kegg
ID egr:104452352
description acetylornithine aminotransferase, mitochondrial-like
nr
ID AGF95092.1
description acetylornithine aminotransferase, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M1P3Y6
description Acetylornithine aminotransferase (Fragment) OS=Prunus persica PE=2 SV=1
Gene Ontology
ID GO:0008483
description acetylornithine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_080 0.0 - - acetylornithine aminotransferase, partial [Prunus persica]
2 Hb_001405_210 0.0756023889 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
3 Hb_122548_010 0.07765524 - - acyl-CoA oxidase, putative [Ricinus communis]
4 Hb_015026_130 0.0866371119 - - quinone oxidoreductase, putative [Ricinus communis]
5 Hb_004102_170 0.0902843207 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
6 Hb_005381_020 0.0919360419 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
7 Hb_000046_570 0.0974350967 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
8 Hb_007062_040 0.0974840687 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
9 Hb_000962_030 0.098287454 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
10 Hb_001829_040 0.1003222536 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
11 Hb_007286_020 0.1005302573 - - hypothetical protein L484_010675 [Morus notabilis]
12 Hb_032990_010 0.102236397 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
13 Hb_000331_090 0.1025467675 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
14 Hb_044486_020 0.1039962837 - - CASTOR protein [Glycine max]
15 Hb_005535_080 0.1062769259 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
16 Hb_000445_470 0.1070240285 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
17 Hb_188063_050 0.1083540605 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_086639_080 0.1087637196 - - conserved hypothetical protein [Ricinus communis]
19 Hb_086063_020 0.1090014034 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
20 Hb_000085_450 0.1108027885 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]

Gene co-expression network

sample Hb_002983_080 Hb_002983_080 Hb_001405_210 Hb_001405_210 Hb_002983_080--Hb_001405_210 Hb_122548_010 Hb_122548_010 Hb_002983_080--Hb_122548_010 Hb_015026_130 Hb_015026_130 Hb_002983_080--Hb_015026_130 Hb_004102_170 Hb_004102_170 Hb_002983_080--Hb_004102_170 Hb_005381_020 Hb_005381_020 Hb_002983_080--Hb_005381_020 Hb_000046_570 Hb_000046_570 Hb_002983_080--Hb_000046_570 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_122548_010--Hb_015026_130 Hb_006502_030 Hb_006502_030 Hb_122548_010--Hb_006502_030 Hb_122548_010--Hb_001405_210 Hb_000120_550 Hb_000120_550 Hb_122548_010--Hb_000120_550 Hb_004055_050 Hb_004055_050 Hb_122548_010--Hb_004055_050 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_000049_020 Hb_000049_020 Hb_004102_170--Hb_000049_020 Hb_000146_040 Hb_000146_040 Hb_004102_170--Hb_000146_040 Hb_000345_160 Hb_000345_160 Hb_004102_170--Hb_000345_160 Hb_004102_170--Hb_001405_210 Hb_005797_010 Hb_005797_010 Hb_004102_170--Hb_005797_010 Hb_005381_020--Hb_000046_570 Hb_005381_020--Hb_007062_040 Hb_000390_250 Hb_000390_250 Hb_005381_020--Hb_000390_250 Hb_000635_040 Hb_000635_040 Hb_005381_020--Hb_000635_040 Hb_001366_090 Hb_001366_090 Hb_005381_020--Hb_001366_090 Hb_002311_380 Hb_002311_380 Hb_005381_020--Hb_002311_380 Hb_000046_570--Hb_007062_040 Hb_000046_570--Hb_004586_060 Hb_000046_570--Hb_007248_030 Hb_000046_570--Hb_000390_250 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2833 3.16131 2.85333 6.15445 2.1444 3.08611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58103 2.81057 0.976442 3.0424 2.05857

CAGE analysis