Hb_073799_010

Information

Type -
Description -
Location Contig73799: 220-684
Sequence    

Annotation

kegg
ID rcu:RCOM_0175220
description hypothetical protein
nr
ID XP_002527507.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SND8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175220 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073799_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002388_010 0.1463936604 - - -
3 Hb_182713_020 0.1507663959 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
4 Hb_011942_010 0.1540157251 - - conserved hypothetical protein [Ricinus communis]
5 Hb_128473_010 0.1758980905 - - -
6 Hb_013394_100 0.1769117833 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
7 Hb_011287_040 0.1777343178 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
8 Hb_008185_020 0.1793481246 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
9 Hb_000111_030 0.1860733722 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
10 Hb_001518_070 0.1924227263 - - conserved hypothetical protein [Ricinus communis]
11 Hb_133724_010 0.2040932251 - - conserved hypothetical protein [Ricinus communis]
12 Hb_030992_010 0.2069758644 - - acetylornithine aminotransferase, putative [Ricinus communis]
13 Hb_002192_090 0.2119632562 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
14 Hb_188313_010 0.2126067851 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
15 Hb_009083_030 0.2150827822 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
16 Hb_130613_010 0.2186192234 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_001247_030 0.2248895888 - - -
18 Hb_001195_410 0.2274553957 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
19 Hb_178620_010 0.2277162191 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
20 Hb_146675_010 0.2286763037 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]

Gene co-expression network

sample Hb_073799_010 Hb_073799_010 Hb_002388_010 Hb_002388_010 Hb_073799_010--Hb_002388_010 Hb_182713_020 Hb_182713_020 Hb_073799_010--Hb_182713_020 Hb_011942_010 Hb_011942_010 Hb_073799_010--Hb_011942_010 Hb_128473_010 Hb_128473_010 Hb_073799_010--Hb_128473_010 Hb_013394_100 Hb_013394_100 Hb_073799_010--Hb_013394_100 Hb_011287_040 Hb_011287_040 Hb_073799_010--Hb_011287_040 Hb_000111_030 Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_002192_090 Hb_002192_090 Hb_002388_010--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_002388_010--Hb_133724_010 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_188313_010 Hb_188313_010 Hb_182713_020--Hb_188313_010 Hb_182713_020--Hb_013394_100 Hb_182713_020--Hb_000111_030 Hb_009083_030 Hb_009083_030 Hb_182713_020--Hb_009083_030 Hb_182713_020--Hb_011287_040 Hb_130613_010 Hb_130613_010 Hb_011942_010--Hb_130613_010 Hb_011942_010--Hb_133724_010 Hb_011942_010--Hb_002388_010 Hb_000733_100 Hb_000733_100 Hb_011942_010--Hb_000733_100 Hb_001518_070 Hb_001518_070 Hb_011942_010--Hb_001518_070 Hb_000261_170 Hb_000261_170 Hb_128473_010--Hb_000261_170 Hb_000649_340 Hb_000649_340 Hb_128473_010--Hb_000649_340 Hb_000311_040 Hb_000311_040 Hb_128473_010--Hb_000311_040 Hb_008185_020 Hb_008185_020 Hb_128473_010--Hb_008185_020 Hb_000483_400 Hb_000483_400 Hb_128473_010--Hb_000483_400 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_011287_040--Hb_001518_070 Hb_011287_040--Hb_008185_020 Hb_000053_030 Hb_000053_030 Hb_011287_040--Hb_000053_030 Hb_011287_040--Hb_013394_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.54439 3.08329 11.9119 41.0381 3.04805 15.2142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61622 12.0464 0.658869 3.69024 0.704168

CAGE analysis