Hb_002079_040

Information

Type -
Description -
Location Contig2079: 29910-32427
Sequence    

Annotation

kegg
ID mtr:MTR_6g005650
description hypothetical protein
nr
ID CAN66565.1
description hypothetical protein VITISV_018542 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5CBH6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018542 PE=4 SV=1
Gene Ontology
ID GO:0009579
description nad -binding rossmann-fold superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21481: 11275-42437
cDNA
(Sanger)
(ID:Location)		 005_N13.ab1: 11782-42400 , 012_L17.ab1: 12491-42437 , 043_P09.ab1: 12507-42398

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002079_040 0.0 - - hypothetical protein VITISV_018542 [Vitis vinifera]
2 Hb_002078_500 0.1470315753 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000034_090 0.1504268792 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
4 Hb_003030_040 0.1627694683 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
5 Hb_013394_100 0.1642401483 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
6 Hb_012675_080 0.1699916564 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
7 Hb_005107_020 0.1730196389 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
8 Hb_000317_140 0.1759956132 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
9 Hb_003642_020 0.1809332899 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
10 Hb_011037_020 0.188172274 - - unknown [Picea sitchensis]
11 Hb_006162_020 0.1920672032 - - -
12 Hb_002168_010 0.193050268 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
13 Hb_003656_150 0.1945521145 - - -
14 Hb_099298_010 0.1954369431 - - -
15 Hb_183522_010 0.1970363354 - - Far upstream element-binding protein, putative [Ricinus communis]
16 Hb_002815_050 0.1978737988 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
17 Hb_108227_010 0.2000931975 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
18 Hb_000015_070 0.2034507885 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
19 Hb_011200_010 0.2084679629 - - -
20 Hb_007763_050 0.2135041463 - - hypothetical protein L484_012752 [Morus notabilis]

Gene co-expression network

sample Hb_002079_040 Hb_002079_040 Hb_002078_500 Hb_002078_500 Hb_002079_040--Hb_002078_500 Hb_000034_090 Hb_000034_090 Hb_002079_040--Hb_000034_090 Hb_003030_040 Hb_003030_040 Hb_002079_040--Hb_003030_040 Hb_013394_100 Hb_013394_100 Hb_002079_040--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_002079_040--Hb_012675_080 Hb_005107_020 Hb_005107_020 Hb_002079_040--Hb_005107_020 Hb_002078_500--Hb_003030_040 Hb_011037_020 Hb_011037_020 Hb_002078_500--Hb_011037_020 Hb_002815_050 Hb_002815_050 Hb_002078_500--Hb_002815_050 Hb_026228_010 Hb_026228_010 Hb_002078_500--Hb_026228_010 Hb_108227_010 Hb_108227_010 Hb_002078_500--Hb_108227_010 Hb_000034_090--Hb_005107_020 Hb_006162_020 Hb_006162_020 Hb_000034_090--Hb_006162_020 Hb_099298_010 Hb_099298_010 Hb_000034_090--Hb_099298_010 Hb_041601_010 Hb_041601_010 Hb_000034_090--Hb_041601_010 Hb_000034_090--Hb_012675_080 Hb_003030_040--Hb_002815_050 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_007188_030 Hb_007188_030 Hb_003030_040--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_003030_040--Hb_003656_150 Hb_003030_040--Hb_005107_020 Hb_005679_070 Hb_005679_070 Hb_003030_040--Hb_005679_070 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_013394_100--Hb_099298_010 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_013394_100--Hb_108227_010 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_012675_080--Hb_011037_020 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_005107_020--Hb_012675_080 Hb_005107_020--Hb_011200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.970695 1.01465 2.28244 28.9041 0.65091 26.1544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.37543 5.74784 0.855805 1.1246 5.10789

CAGE analysis