Hb_006162_020

Information

Type -
Description -
Location Contig6162: 19078-20534
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0004560
description alpha-l-fucosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51234: 1288-37128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006162_020 0.0 - - -
2 Hb_162090_010 0.0912595885 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
3 Hb_022614_010 0.0999123697 - - -
4 Hb_017014_020 0.1283329435 - - -
5 Hb_005107_020 0.1368952385 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
6 Hb_000034_090 0.1467304143 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
7 Hb_183522_010 0.1708976555 - - Far upstream element-binding protein, putative [Ricinus communis]
8 Hb_013394_100 0.1753582895 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
9 Hb_011200_010 0.1769359622 - - -
10 Hb_000953_120 0.177919119 - - -
11 Hb_188313_010 0.1785490754 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
12 Hb_099298_010 0.1787220374 - - -
13 Hb_009083_030 0.1828650159 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
14 Hb_006794_010 0.1830543744 - - elicitor-responsive protein [Hevea brasiliensis]
15 Hb_000025_080 0.1832573309 - - -
16 Hb_041601_010 0.1867762047 - - -
17 Hb_002079_040 0.1920672032 - - hypothetical protein VITISV_018542 [Vitis vinifera]
18 Hb_002016_030 0.1956437917 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009119_010 0.2002854898 - - -
20 Hb_114079_010 0.2028554996 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]

Gene co-expression network

sample Hb_006162_020 Hb_006162_020 Hb_162090_010 Hb_162090_010 Hb_006162_020--Hb_162090_010 Hb_022614_010 Hb_022614_010 Hb_006162_020--Hb_022614_010 Hb_017014_020 Hb_017014_020 Hb_006162_020--Hb_017014_020 Hb_005107_020 Hb_005107_020 Hb_006162_020--Hb_005107_020 Hb_000034_090 Hb_000034_090 Hb_006162_020--Hb_000034_090 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010 Hb_162090_010--Hb_022614_010 Hb_162090_010--Hb_017014_020 Hb_162090_010--Hb_005107_020 Hb_000953_120 Hb_000953_120 Hb_162090_010--Hb_000953_120 Hb_041601_010 Hb_041601_010 Hb_162090_010--Hb_041601_010 Hb_022614_010--Hb_017014_020 Hb_011200_010 Hb_011200_010 Hb_022614_010--Hb_011200_010 Hb_022614_010--Hb_005107_020 Hb_013394_100 Hb_013394_100 Hb_022614_010--Hb_013394_100 Hb_009083_030 Hb_009083_030 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_000025_080 Hb_000025_080 Hb_017014_020--Hb_000025_080 Hb_005107_020--Hb_000034_090 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_012675_080 Hb_012675_080 Hb_005107_020--Hb_012675_080 Hb_005107_020--Hb_011200_010 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_099298_010 Hb_099298_010 Hb_000034_090--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_000034_090--Hb_002079_040 Hb_000034_090--Hb_041601_010 Hb_000034_090--Hb_012675_080 Hb_007083_020 Hb_007083_020 Hb_183522_010--Hb_007083_020 Hb_106415_010 Hb_106415_010 Hb_183522_010--Hb_106415_010 Hb_114079_010 Hb_114079_010 Hb_183522_010--Hb_114079_010 Hb_010964_020 Hb_010964_020 Hb_183522_010--Hb_010964_020 Hb_000053_030 Hb_000053_030 Hb_183522_010--Hb_000053_030 Hb_183522_010--Hb_005107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.2733 17.3131 14.7564 329.934 16.7188 181.828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6135 18.6121 6.47106 12.7503 12.5739

CAGE analysis