Hb_041601_010

Information

Type -
Description -
Location Contig41601: 1950-2725
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041601_010 0.0 - - -
2 Hb_000953_120 0.1222680292 - - -
3 Hb_000251_020 0.1609658502 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
4 Hb_000034_090 0.1662405432 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
5 Hb_162090_010 0.1712195861 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
6 Hb_002016_030 0.1754256458 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000025_080 0.1845881387 - - -
8 Hb_006162_020 0.1867762047 - - -
9 Hb_017014_020 0.1903223284 - - -
10 Hb_099298_010 0.1904238531 - - -
11 Hb_047691_010 0.2048155181 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
12 Hb_005107_020 0.2050371497 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
13 Hb_022614_010 0.2052056463 - - -
14 Hb_009119_010 0.2054276042 - - -
15 Hb_001089_080 0.2247371306 - - hypothetical protein glysoja_044047 [Glycine soja]
16 Hb_009083_030 0.2339512687 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
17 Hb_022891_010 0.2372825936 - - chitinase-like protein [Hevea brasiliensis]
18 Hb_004033_020 0.2379857027 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
19 Hb_011200_010 0.2423030152 - - -
20 Hb_006910_050 0.2441918511 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_041601_010 Hb_041601_010 Hb_000953_120 Hb_000953_120 Hb_041601_010--Hb_000953_120 Hb_000251_020 Hb_000251_020 Hb_041601_010--Hb_000251_020 Hb_000034_090 Hb_000034_090 Hb_041601_010--Hb_000034_090 Hb_162090_010 Hb_162090_010 Hb_041601_010--Hb_162090_010 Hb_002016_030 Hb_002016_030 Hb_041601_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_041601_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_000953_120--Hb_009119_010 Hb_000953_120--Hb_002016_030 Hb_000953_120--Hb_000025_080 Hb_000953_120--Hb_162090_010 Hb_000953_120--Hb_000034_090 Hb_000251_020--Hb_000953_120 Hb_004033_020 Hb_004033_020 Hb_000251_020--Hb_004033_020 Hb_022614_010 Hb_022614_010 Hb_000251_020--Hb_022614_010 Hb_000251_020--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000251_020--Hb_017014_020 Hb_005107_020 Hb_005107_020 Hb_000034_090--Hb_005107_020 Hb_006162_020 Hb_006162_020 Hb_000034_090--Hb_006162_020 Hb_099298_010 Hb_099298_010 Hb_000034_090--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_000034_090--Hb_002079_040 Hb_012675_080 Hb_012675_080 Hb_000034_090--Hb_012675_080 Hb_162090_010--Hb_022614_010 Hb_162090_010--Hb_006162_020 Hb_162090_010--Hb_017014_020 Hb_162090_010--Hb_005107_020 Hb_002016_030--Hb_009119_010 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_010367_020 Hb_010367_020 Hb_002016_030--Hb_010367_020 Hb_000025_080--Hb_009119_010 Hb_000025_080--Hb_162090_010 Hb_000025_080--Hb_017014_020 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.266738 0.27021 23.1458 0 9.94517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17713 0.932931 0.601573 2.18666 0.64536

CAGE analysis