Hb_000251_020

Information

Type -
Description -
Location Contig251: 47648-47830
Sequence    

Annotation

kegg
ID eus:EUTSA_v10024704mg
description hypothetical protein
nr
ID KDO79180.1
description hypothetical protein CISIN_1g028541mg [Citrus sinensis]
swissprot
ID Q6P3H4
description Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt PE=2 SV=2
trembl
ID A0A067GKL3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028541mg PE=4 SV=1
Gene Ontology
ID GO:0004514
description nicotinate phosphoribosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26218: 47660-56723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_020 0.0 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
2 Hb_041601_010 0.1609658502 - - -
3 Hb_000953_120 0.2124488135 - - -
4 Hb_004033_020 0.2154218197 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
5 Hb_022614_010 0.222679256 - - -
6 Hb_162090_010 0.2231598896 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
7 Hb_017014_020 0.2258023396 - - -
8 Hb_047691_010 0.2335829535 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
9 Hb_002016_030 0.2372910497 - - conserved hypothetical protein [Ricinus communis]
10 Hb_133648_010 0.2416456151 - - -
11 Hb_006162_020 0.2450139572 - - -
12 Hb_099298_010 0.2452101011 - - -
13 Hb_000025_080 0.2466638931 - - -
14 Hb_121694_010 0.2488822236 - - structural constituent of ribosome, putative [Ricinus communis]
15 Hb_080081_010 0.2495967388 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
16 Hb_188313_010 0.2522684088 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
17 Hb_009083_030 0.2544729301 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
18 Hb_000350_040 0.2568755001 - - -
19 Hb_004125_070 0.2575232907 - - Glycolipid transfer protein, putative [Ricinus communis]
20 Hb_184541_010 0.2685666797 - - PREDICTED: selT-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000251_020 Hb_000251_020 Hb_041601_010 Hb_041601_010 Hb_000251_020--Hb_041601_010 Hb_000953_120 Hb_000953_120 Hb_000251_020--Hb_000953_120 Hb_004033_020 Hb_004033_020 Hb_000251_020--Hb_004033_020 Hb_022614_010 Hb_022614_010 Hb_000251_020--Hb_022614_010 Hb_162090_010 Hb_162090_010 Hb_000251_020--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000251_020--Hb_017014_020 Hb_041601_010--Hb_000953_120 Hb_000034_090 Hb_000034_090 Hb_041601_010--Hb_000034_090 Hb_041601_010--Hb_162090_010 Hb_002016_030 Hb_002016_030 Hb_041601_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_041601_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_000953_120--Hb_009119_010 Hb_000953_120--Hb_002016_030 Hb_000953_120--Hb_000025_080 Hb_000953_120--Hb_162090_010 Hb_000953_120--Hb_000034_090 Hb_004125_070 Hb_004125_070 Hb_004033_020--Hb_004125_070 Hb_005854_050 Hb_005854_050 Hb_004033_020--Hb_005854_050 Hb_184541_010 Hb_184541_010 Hb_004033_020--Hb_184541_010 Hb_009083_030 Hb_009083_030 Hb_004033_020--Hb_009083_030 Hb_121694_010 Hb_121694_010 Hb_004033_020--Hb_121694_010 Hb_022614_010--Hb_162090_010 Hb_006162_020 Hb_006162_020 Hb_022614_010--Hb_006162_020 Hb_022614_010--Hb_017014_020 Hb_011200_010 Hb_011200_010 Hb_022614_010--Hb_011200_010 Hb_005107_020 Hb_005107_020 Hb_022614_010--Hb_005107_020 Hb_013394_100 Hb_013394_100 Hb_022614_010--Hb_013394_100 Hb_162090_010--Hb_006162_020 Hb_162090_010--Hb_017014_020 Hb_162090_010--Hb_005107_020 Hb_017014_020--Hb_006162_020 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_017014_020--Hb_000025_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.5016 3.93544 222.717 0 55.7235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.86868 9.39577 3.92626 25.0838 0

CAGE analysis