Hb_009119_010

Information

Type -
Description -
Location Contig9119: 18343-19171
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62152: 18745-18863 , PASA_asmbl_62153: 18897-33978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009119_010 0.0 - - -
2 Hb_002972_060 0.1269494888 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_000953_120 0.1306374955 - - -
4 Hb_002016_030 0.1542426413 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_080 0.1594618141 - - -
6 Hb_000270_540 0.16893657 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
7 Hb_013040_010 0.1769654878 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
8 Hb_162090_010 0.1771591316 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
9 Hb_005723_070 0.1775579344 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
10 Hb_001660_140 0.1778626444 - - -
11 Hb_182507_010 0.1782311396 - - -
12 Hb_006794_010 0.1810747506 - - elicitor-responsive protein [Hevea brasiliensis]
13 Hb_004907_030 0.1875010711 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
14 Hb_000876_010 0.1899899726 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
15 Hb_005368_030 0.1939336784 - - -
16 Hb_033312_110 0.1967193882 - - -
17 Hb_006162_020 0.2002854898 - - -
18 Hb_010367_020 0.2008497122 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
19 Hb_041601_010 0.2054276042 - - -
20 Hb_022614_010 0.2131565342 - - -

Gene co-expression network

sample Hb_009119_010 Hb_009119_010 Hb_002972_060 Hb_002972_060 Hb_009119_010--Hb_002972_060 Hb_000953_120 Hb_000953_120 Hb_009119_010--Hb_000953_120 Hb_002016_030 Hb_002016_030 Hb_009119_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_009119_010--Hb_000025_080 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010 Hb_008096_020 Hb_008096_020 Hb_002972_060--Hb_008096_020 Hb_005723_070 Hb_005723_070 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002450_130 Hb_002450_130 Hb_002972_060--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_002972_060--Hb_000876_010 Hb_041601_010 Hb_041601_010 Hb_000953_120--Hb_041601_010 Hb_000953_120--Hb_002016_030 Hb_000953_120--Hb_000025_080 Hb_162090_010 Hb_162090_010 Hb_000953_120--Hb_162090_010 Hb_000034_090 Hb_000034_090 Hb_000953_120--Hb_000034_090 Hb_002016_030--Hb_041601_010 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_010367_020 Hb_010367_020 Hb_002016_030--Hb_010367_020 Hb_000025_080--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000025_080--Hb_017014_020 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010 Hb_001660_140 Hb_001660_140 Hb_000270_540--Hb_001660_140 Hb_182507_010 Hb_182507_010 Hb_000270_540--Hb_182507_010 Hb_000270_540--Hb_013040_010 Hb_005368_030 Hb_005368_030 Hb_000270_540--Hb_005368_030 Hb_004907_030 Hb_004907_030 Hb_000270_540--Hb_004907_030 Hb_033312_110 Hb_033312_110 Hb_000270_540--Hb_033312_110 Hb_013040_010--Hb_001660_140 Hb_013040_010--Hb_182507_010 Hb_013040_010--Hb_004907_030 Hb_013040_010--Hb_033312_110 Hb_013040_010--Hb_005368_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49538 2.04823 3.54317 225.555 1.50841 155.505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.98233 5.59488 0.922402 3.75316 0

CAGE analysis