Hb_005723_070

Information

Type -
Description -
Location Contig5723: 107283-107675
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_917584
description hypothetical protein
nr
ID KDO68188.1
description hypothetical protein CISIN_1g011514mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FLJ1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011514mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49388: 75180-107829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005723_070 0.0 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
2 Hb_000130_170 0.124900311 - - -
3 Hb_000876_010 0.128804714 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
4 Hb_002972_060 0.1445745516 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
5 Hb_002450_130 0.1613763646 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
6 Hb_033312_110 0.1633663839 - - -
7 Hb_000300_140 0.1656041021 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
8 Hb_068804_060 0.1667833875 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
9 Hb_007290_020 0.1668159381 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
10 Hb_004907_030 0.1674417809 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
11 Hb_007356_010 0.1680667274 - - CTV.19 [Citrus trifoliata]
12 Hb_163132_010 0.169166737 - - -
13 Hb_009119_010 0.1775579344 - - -
14 Hb_103093_010 0.1794089977 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
15 Hb_005318_010 0.1820697031 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
16 Hb_081815_010 0.1869702217 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
17 Hb_003025_060 0.1884191724 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
18 Hb_013040_010 0.1902418913 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
19 Hb_000270_540 0.1966487555 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
20 Hb_008096_020 0.199102461 - - -

Gene co-expression network

sample Hb_005723_070 Hb_005723_070 Hb_000130_170 Hb_000130_170 Hb_005723_070--Hb_000130_170 Hb_000876_010 Hb_000876_010 Hb_005723_070--Hb_000876_010 Hb_002972_060 Hb_002972_060 Hb_005723_070--Hb_002972_060 Hb_002450_130 Hb_002450_130 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_103093_010 Hb_103093_010 Hb_000130_170--Hb_103093_010 Hb_000340_330 Hb_000340_330 Hb_000130_170--Hb_000340_330 Hb_000130_170--Hb_002450_130 Hb_000130_170--Hb_000876_010 Hb_005318_010 Hb_005318_010 Hb_000130_170--Hb_005318_010 Hb_000876_010--Hb_002450_130 Hb_000876_010--Hb_002972_060 Hb_003025_060 Hb_003025_060 Hb_000876_010--Hb_003025_060 Hb_009119_010 Hb_009119_010 Hb_000876_010--Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_008096_020 Hb_008096_020 Hb_002972_060--Hb_008096_020 Hb_002972_060--Hb_005318_010 Hb_002972_060--Hb_002450_130 Hb_002450_130--Hb_008096_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_004907_030 Hb_004907_030 Hb_033312_110--Hb_004907_030 Hb_033312_110--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_033312_110--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_033312_110--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_033312_110--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_033312_110--Hb_163132_010 Hb_000300_140--Hb_068804_060 Hb_000300_140--Hb_007290_020 Hb_000300_140--Hb_007356_010 Hb_000300_140--Hb_163132_010 Hb_000300_140--Hb_004907_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0712 2.89369 0.427477 408.293 12.0523 459.793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71305 0 4.88336 7.72424 1.72217

CAGE analysis