Hb_000291_130

Information

Type -
Description -
Location Contig291: 113979-115422
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09070g
description POPTRDRAFT_848802; hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_130 0.0 - - -
2 Hb_002450_130 0.1428008635 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
3 Hb_002204_040 0.1475752726 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
4 Hb_001579_040 0.163642343 - - -
5 Hb_000671_040 0.1797111133 - - -
6 Hb_008096_020 0.1808971421 - - -
7 Hb_002972_060 0.196770219 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_122567_020 0.1989433629 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
9 Hb_001385_080 0.2011768621 - - -
10 Hb_106873_010 0.2013243832 - - -
11 Hb_007188_050 0.2153616764 - - -
12 Hb_000876_010 0.2166561114 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
13 Hb_000084_130 0.2189792982 - - -
14 Hb_059952_010 0.2199124649 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
15 Hb_079978_010 0.2206960052 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
16 Hb_001454_110 0.2242583554 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
17 Hb_103093_010 0.2250491269 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
18 Hb_081815_010 0.2284349263 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
19 Hb_163132_010 0.229378765 - - -
20 Hb_001907_090 0.2309024979 - - -

Gene co-expression network

sample Hb_000291_130 Hb_000291_130 Hb_002450_130 Hb_002450_130 Hb_000291_130--Hb_002450_130 Hb_002204_040 Hb_002204_040 Hb_000291_130--Hb_002204_040 Hb_001579_040 Hb_001579_040 Hb_000291_130--Hb_001579_040 Hb_000671_040 Hb_000671_040 Hb_000291_130--Hb_000671_040 Hb_008096_020 Hb_008096_020 Hb_000291_130--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_000291_130--Hb_002972_060 Hb_002450_130--Hb_008096_020 Hb_000876_010 Hb_000876_010 Hb_002450_130--Hb_000876_010 Hb_002450_130--Hb_002972_060 Hb_005723_070 Hb_005723_070 Hb_002450_130--Hb_005723_070 Hb_000130_170 Hb_000130_170 Hb_002450_130--Hb_000130_170 Hb_005839_010 Hb_005839_010 Hb_002204_040--Hb_005839_010 Hb_079978_010 Hb_079978_010 Hb_002204_040--Hb_079978_010 Hb_106873_010 Hb_106873_010 Hb_002204_040--Hb_106873_010 Hb_001385_080 Hb_001385_080 Hb_002204_040--Hb_001385_080 Hb_122567_020 Hb_122567_020 Hb_002204_040--Hb_122567_020 Hb_001454_110 Hb_001454_110 Hb_001579_040--Hb_001454_110 Hb_059952_010 Hb_059952_010 Hb_001579_040--Hb_059952_010 Hb_000316_090 Hb_000316_090 Hb_001579_040--Hb_000316_090 Hb_032531_040 Hb_032531_040 Hb_001579_040--Hb_032531_040 Hb_145827_010 Hb_145827_010 Hb_001579_040--Hb_145827_010 Hb_000671_040--Hb_106873_010 Hb_163132_010 Hb_163132_010 Hb_000671_040--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_000671_040--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_000671_040--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000671_040--Hb_068804_060 Hb_000300_140 Hb_000300_140 Hb_000671_040--Hb_000300_140 Hb_021943_070 Hb_021943_070 Hb_008096_020--Hb_021943_070 Hb_008096_020--Hb_002972_060 Hb_000084_130 Hb_000084_130 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002972_060--Hb_000876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.6008 4.28103 27.5914 833.908 33.7051 2454.02
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2017 70.3123 6.47106 2.7322 2.09565

CAGE analysis