Hb_001454_110

Information

Type -
Description -
Location Contig1454: 79635-80213
Sequence    

Annotation

kegg
ID pop:POPTR_0026s00250g
description hypothetical protein
nr
ID XP_006389382.1
description hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7E2X1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0026s00250g PE=4 SV=1
Gene Ontology
ID GO:0005634
description heat shock factor-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11738: 79784-82258
cDNA
(Sanger)
(ID:Location)		 025_B14.ab1: 79784-82250

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_110 0.0 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
2 Hb_032531_040 0.0693422252 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
3 Hb_000805_300 0.130973277 - - -
4 Hb_032531_050 0.1548244947 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
5 Hb_059952_010 0.1679397712 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
6 Hb_001579_040 0.1756872189 - - -
7 Hb_101151_030 0.1759617613 - - -
8 Hb_000589_320 0.1833641569 - - unnamed protein product [Vitis vinifera]
9 Hb_001385_080 0.1859151464 - - -
10 Hb_000002_030 0.1871196222 - - -
11 Hb_122567_020 0.1975842328 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
12 Hb_005839_010 0.2027710845 - - 30S ribosomal protein s13 [Camellia sinensis]
13 Hb_000316_090 0.2048154726 - - -
14 Hb_005933_010 0.2074534693 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
15 Hb_174005_010 0.2078889557 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
16 Hb_145827_010 0.2083530537 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
17 Hb_079978_010 0.2156410219 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
18 Hb_002204_040 0.2218083075 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
19 Hb_187459_010 0.2225008576 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
20 Hb_003623_020 0.223692506 - - -

Gene co-expression network

sample Hb_001454_110 Hb_001454_110 Hb_032531_040 Hb_032531_040 Hb_001454_110--Hb_032531_040 Hb_000805_300 Hb_000805_300 Hb_001454_110--Hb_000805_300 Hb_032531_050 Hb_032531_050 Hb_001454_110--Hb_032531_050 Hb_059952_010 Hb_059952_010 Hb_001454_110--Hb_059952_010 Hb_001579_040 Hb_001579_040 Hb_001454_110--Hb_001579_040 Hb_101151_030 Hb_101151_030 Hb_001454_110--Hb_101151_030 Hb_032531_040--Hb_032531_050 Hb_032531_040--Hb_000805_300 Hb_174005_010 Hb_174005_010 Hb_032531_040--Hb_174005_010 Hb_000589_320 Hb_000589_320 Hb_032531_040--Hb_000589_320 Hb_032531_040--Hb_001579_040 Hb_122567_020 Hb_122567_020 Hb_000805_300--Hb_122567_020 Hb_000805_300--Hb_101151_030 Hb_005933_010 Hb_005933_010 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_000002_030 Hb_000002_030 Hb_032531_050--Hb_000002_030 Hb_000316_090 Hb_000316_090 Hb_032531_050--Hb_000316_090 Hb_032531_050--Hb_000805_300 Hb_034579_010 Hb_034579_010 Hb_032531_050--Hb_034579_010 Hb_059952_010--Hb_122567_020 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_059952_010--Hb_005933_010 Hb_001385_080 Hb_001385_080 Hb_059952_010--Hb_001385_080 Hb_000291_130 Hb_000291_130 Hb_001579_040--Hb_000291_130 Hb_001579_040--Hb_059952_010 Hb_001579_040--Hb_000316_090 Hb_145827_010 Hb_145827_010 Hb_001579_040--Hb_145827_010 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_101151_030--Hb_000002_030 Hb_001235_060 Hb_001235_060 Hb_101151_030--Hb_001235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7224 0.932229 7.32023 254.576 38.4044 3530.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.8135 92.0753 35.4711 10.8301 6.41238

CAGE analysis