Hb_145827_010

Information

Type -
Description -
Location Contig145827: 19415-19549
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13630g
description hypothetical protein
nr
ID XP_006385789.1
description hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GMK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13630g PE=4 SV=1
Gene Ontology
ID GO:0005739
description cox19-like chch family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145827_010 0.0 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
2 Hb_059952_010 0.1824793174 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
3 Hb_000316_090 0.1877989993 - - -
4 Hb_001579_040 0.1995323286 - - -
5 Hb_000002_030 0.2035636597 - - -
6 Hb_001454_110 0.2083530537 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_001981_080 0.2115693046 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
8 Hb_001385_080 0.2267642985 - - -
9 Hb_032531_040 0.2306108415 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
10 Hb_001235_060 0.2313942498 - - -
11 Hb_096490_010 0.2339903638 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
12 Hb_005933_010 0.2343399724 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
13 Hb_034579_010 0.2375843351 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
14 Hb_001691_160 0.2426844981 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000204_020 0.2445912431 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
16 Hb_000684_480 0.2491178802 transcription factor TF Family: Orphans -
17 Hb_032531_050 0.2506858124 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
18 Hb_000805_300 0.2507478142 - - -
19 Hb_032531_060 0.2522557047 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
20 Hb_003927_150 0.2536454412 - - -

Gene co-expression network

sample Hb_145827_010 Hb_145827_010 Hb_059952_010 Hb_059952_010 Hb_145827_010--Hb_059952_010 Hb_000316_090 Hb_000316_090 Hb_145827_010--Hb_000316_090 Hb_001579_040 Hb_001579_040 Hb_145827_010--Hb_001579_040 Hb_000002_030 Hb_000002_030 Hb_145827_010--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_145827_010--Hb_001454_110 Hb_001981_080 Hb_001981_080 Hb_145827_010--Hb_001981_080 Hb_122567_020 Hb_122567_020 Hb_059952_010--Hb_122567_020 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_005933_010 Hb_005933_010 Hb_059952_010--Hb_005933_010 Hb_000805_300 Hb_000805_300 Hb_059952_010--Hb_000805_300 Hb_059952_010--Hb_001454_110 Hb_001385_080 Hb_001385_080 Hb_059952_010--Hb_001385_080 Hb_000316_090--Hb_000002_030 Hb_032531_050 Hb_032531_050 Hb_000316_090--Hb_032531_050 Hb_034579_010 Hb_034579_010 Hb_000316_090--Hb_034579_010 Hb_000684_480 Hb_000684_480 Hb_000316_090--Hb_000684_480 Hb_000316_090--Hb_001579_040 Hb_000291_130 Hb_000291_130 Hb_001579_040--Hb_000291_130 Hb_001579_040--Hb_001454_110 Hb_001579_040--Hb_059952_010 Hb_032531_040 Hb_032531_040 Hb_001579_040--Hb_032531_040 Hb_000002_030--Hb_032531_050 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_101151_030 Hb_101151_030 Hb_000002_030--Hb_101151_030 Hb_001235_060 Hb_001235_060 Hb_000002_030--Hb_001235_060 Hb_001454_110--Hb_032531_040 Hb_001454_110--Hb_000805_300 Hb_001454_110--Hb_032531_050 Hb_001454_110--Hb_101151_030 Hb_126398_010 Hb_126398_010 Hb_001981_080--Hb_126398_010 Hb_001544_020 Hb_001544_020 Hb_001981_080--Hb_001544_020 Hb_036285_010 Hb_036285_010 Hb_001981_080--Hb_036285_010 Hb_003702_050 Hb_003702_050 Hb_001981_080--Hb_003702_050 Hb_000003_690 Hb_000003_690 Hb_001981_080--Hb_000003_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
174.34 0 0 190.879 20.3652 2406.7
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.623 267.064 0 0 0

CAGE analysis