Hb_000684_480

Information

Type transcription factor
Description TF Family: Orphans
Location Contig684: 444804-445481
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54033: 423170-445732 , PASA_asmbl_54034: 423595-445732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_480 0.0 transcription factor TF Family: Orphans -
2 Hb_001907_090 0.1817863765 - - -
3 Hb_000316_090 0.1918966808 - - -
4 Hb_003029_100 0.2044215303 - - -
5 Hb_004958_040 0.2092552136 - - -
6 Hb_124141_010 0.2135477308 - - plant origin recognition complex subunit, putative [Ricinus communis]
7 Hb_075745_010 0.2138396722 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
8 Hb_001579_040 0.2151212465 - - -
9 Hb_000204_020 0.2176193214 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
10 Hb_006995_010 0.2233747567 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
11 Hb_122567_020 0.2237078646 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
12 Hb_005933_010 0.2241820109 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
13 Hb_007083_050 0.2279135304 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
14 Hb_000289_080 0.228575633 - - conserved hypothetical protein [Ricinus communis]
15 Hb_034579_010 0.2295217535 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
16 Hb_071079_050 0.2303016396 - - -
17 Hb_000926_350 0.2382696036 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
18 Hb_007188_050 0.2411828009 - - -
19 Hb_079978_010 0.2425006575 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
20 Hb_032531_050 0.2431036053 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]

Gene co-expression network

sample Hb_000684_480 Hb_000684_480 Hb_001907_090 Hb_001907_090 Hb_000684_480--Hb_001907_090 Hb_000316_090 Hb_000316_090 Hb_000684_480--Hb_000316_090 Hb_003029_100 Hb_003029_100 Hb_000684_480--Hb_003029_100 Hb_004958_040 Hb_004958_040 Hb_000684_480--Hb_004958_040 Hb_124141_010 Hb_124141_010 Hb_000684_480--Hb_124141_010 Hb_075745_010 Hb_075745_010 Hb_000684_480--Hb_075745_010 Hb_001907_090--Hb_004958_040 Hb_122567_020 Hb_122567_020 Hb_001907_090--Hb_122567_020 Hb_000066_180 Hb_000066_180 Hb_001907_090--Hb_000066_180 Hb_001385_080 Hb_001385_080 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130 Hb_000002_030 Hb_000002_030 Hb_000316_090--Hb_000002_030 Hb_032531_050 Hb_032531_050 Hb_000316_090--Hb_032531_050 Hb_034579_010 Hb_034579_010 Hb_000316_090--Hb_034579_010 Hb_145827_010 Hb_145827_010 Hb_000316_090--Hb_145827_010 Hb_001579_040 Hb_001579_040 Hb_000316_090--Hb_001579_040 Hb_000289_080 Hb_000289_080 Hb_003029_100--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_003029_100--Hb_006995_010 Hb_003656_150 Hb_003656_150 Hb_003029_100--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_003029_100--Hb_000086_190 Hb_003029_100--Hb_124141_010 Hb_006198_090 Hb_006198_090 Hb_003029_100--Hb_006198_090 Hb_059952_010 Hb_059952_010 Hb_004958_040--Hb_059952_010 Hb_004958_040--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_004958_040--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_004958_040--Hb_000617_170 Hb_000805_300 Hb_000805_300 Hb_004958_040--Hb_000805_300 Hb_005731_140 Hb_005731_140 Hb_124141_010--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_124141_010--Hb_166480_010 Hb_032531_060 Hb_032531_060 Hb_124141_010--Hb_032531_060 Hb_124141_010--Hb_034579_010 Hb_002482_060 Hb_002482_060 Hb_124141_010--Hb_002482_060 Hb_075745_010--Hb_003029_100 Hb_075745_010--Hb_000289_080 Hb_075745_010--Hb_006995_010 Hb_075745_010--Hb_003656_150 Hb_120052_010 Hb_120052_010 Hb_075745_010--Hb_120052_010 Hb_012675_080 Hb_012675_080 Hb_075745_010--Hb_012675_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311428 0.673193 0 3.39733 0 16.3096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.686519 2.18273 0.680471 0.256458 0

CAGE analysis