Hb_003029_100

Information

Type -
Description -
Location Contig3029: 69508-70239
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016853
description peptidyl-prolyl cis-trans

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31941: 50691-69685 , PASA_asmbl_31942: 69873-70318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_100 0.0 - - -
2 Hb_000289_080 0.1226372363 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006995_010 0.1273339436 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
4 Hb_003656_150 0.136813489 - - -
5 Hb_000086_190 0.155139561 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
6 Hb_124141_010 0.1564227096 - - plant origin recognition complex subunit, putative [Ricinus communis]
7 Hb_006198_090 0.1580344891 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
8 Hb_075745_010 0.160152905 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
9 Hb_000204_020 0.1609149751 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
10 Hb_177103_010 0.1609336308 - - PREDICTED: histone H2AX [Elaeis guineensis]
11 Hb_007188_030 0.1624615207 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
12 Hb_000668_020 0.1713641751 - - -
13 Hb_000084_130 0.1843527024 - - -
14 Hb_012675_080 0.1845992304 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
15 Hb_169170_010 0.1874690586 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
16 Hb_166480_010 0.1893201996 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
17 Hb_000810_020 0.1978639959 - - -
18 Hb_010565_040 0.1993263443 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
19 Hb_000684_480 0.2044215303 transcription factor TF Family: Orphans -
20 Hb_008096_020 0.2044240028 - - -

Gene co-expression network

sample Hb_003029_100 Hb_003029_100 Hb_000289_080 Hb_000289_080 Hb_003029_100--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_003029_100--Hb_006995_010 Hb_003656_150 Hb_003656_150 Hb_003029_100--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_006198_090 Hb_006198_090 Hb_003029_100--Hb_006198_090 Hb_000289_080--Hb_006995_010 Hb_000289_080--Hb_000086_190 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_000668_020 Hb_000668_020 Hb_000289_080--Hb_000668_020 Hb_000289_080--Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_012675_080 Hb_012675_080 Hb_006995_010--Hb_012675_080 Hb_006995_010--Hb_000086_190 Hb_006995_010--Hb_006198_090 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_000086_190--Hb_000668_020 Hb_010368_030 Hb_010368_030 Hb_000086_190--Hb_010368_030 Hb_000086_190--Hb_012675_080 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250 Hb_005731_140 Hb_005731_140 Hb_124141_010--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_124141_010--Hb_166480_010 Hb_032531_060 Hb_032531_060 Hb_124141_010--Hb_032531_060 Hb_034579_010 Hb_034579_010 Hb_124141_010--Hb_034579_010 Hb_002482_060 Hb_002482_060 Hb_124141_010--Hb_002482_060 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_006198_090--Hb_007188_030 Hb_006198_090--Hb_002482_060 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12249 0.180584 0 14.4661 0.621917 40.8097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.24011 7.9604 1.25777 2.32635 1.3657

CAGE analysis