Hb_003656_150

Information

Type -
Description -
Location Contig3656: 140957-141906
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37648: 136019-143936 , PASA_asmbl_37649: 136019-141557
cDNA
(Sanger)
(ID:Location)		 003_N03.ab1: 136030-141314 , 014_L24.ab1: 136030-141243 , 028_I21.ab1: 136030-141229 , 047_H02.ab1: 136030-141309

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_150 0.0 - - -
2 Hb_006995_010 0.0769452578 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
3 Hb_007188_030 0.1124773665 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
4 Hb_012675_080 0.1145235248 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
5 Hb_006198_090 0.1166168014 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
6 Hb_003029_100 0.136813489 - - -
7 Hb_003030_040 0.1378603456 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
8 Hb_177103_010 0.1396070568 - - PREDICTED: histone H2AX [Elaeis guineensis]
9 Hb_002815_050 0.1461284274 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
10 Hb_000289_080 0.1521082796 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000086_190 0.1536872501 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
12 Hb_169170_010 0.1536913137 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
13 Hb_008096_020 0.1546278501 - - -
14 Hb_031866_050 0.1576540906 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
15 Hb_005107_020 0.1686306812 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
16 Hb_000084_130 0.1717224113 - - -
17 Hb_005679_070 0.171918675 - - hypothetical protein M569_07741, partial [Genlisea aurea]
18 Hb_068014_010 0.1738082671 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
19 Hb_166480_010 0.175013141 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
20 Hb_007083_020 0.17915531 - - hypothetical protein F775_15403 [Aegilops tauschii]

Gene co-expression network

sample Hb_003656_150 Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_006198_090 Hb_006198_090 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_000289_080 Hb_000289_080 Hb_006995_010--Hb_000289_080 Hb_006995_010--Hb_003029_100 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006995_010--Hb_006198_090 Hb_002815_050 Hb_002815_050 Hb_007188_030--Hb_002815_050 Hb_007188_030--Hb_006198_090 Hb_177103_010 Hb_177103_010 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_003030_040 Hb_005679_070 Hb_005679_070 Hb_007188_030--Hb_005679_070 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_002482_060 Hb_002482_060 Hb_006198_090--Hb_002482_060 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010 Hb_003029_100--Hb_000289_080 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_003029_100--Hb_006198_090 Hb_003030_040--Hb_002815_050 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_005107_020 Hb_005107_020 Hb_003030_040--Hb_005107_020 Hb_003030_040--Hb_005679_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3806 4.96399 4.85942 194.046 11.3212 342.006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.5306 39.6774 21.1612 24.4601 14.6384

CAGE analysis