Hb_007188_030

Information

Type -
Description -
Location Contig7188: 49675-57857
Sequence    

Annotation

kegg
ID mdm:103400273
description DNA topoisomerase 3-alpha-like
nr
ID XP_008337148.1
description PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
swissprot
ID -
description -
trembl
ID M0WQP6
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=3 SV=1
Gene Ontology
ID GO:0005694
description dna topoisomerase 3-alpha isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55532: 43052-83584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007188_030 0.0 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
2 Hb_003656_150 0.1124773665 - - -
3 Hb_002815_050 0.1156001634 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
4 Hb_006198_090 0.1197292189 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
5 Hb_177103_010 0.1250127417 - - PREDICTED: histone H2AX [Elaeis guineensis]
6 Hb_003030_040 0.1366882899 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
7 Hb_005679_070 0.1414771573 - - hypothetical protein M569_07741, partial [Genlisea aurea]
8 Hb_001998_140 0.1433758543 - - -
9 Hb_169170_010 0.1527598322 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
10 Hb_006995_010 0.1609490343 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
11 Hb_003029_100 0.1624615207 - - -
12 Hb_031866_050 0.1637416142 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
13 Hb_068014_010 0.1707939299 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
14 Hb_005318_020 0.1745101193 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
15 Hb_022891_010 0.1780132873 - - chitinase-like protein [Hevea brasiliensis]
16 Hb_000810_020 0.1817087894 - - -
17 Hb_008096_020 0.1864401369 - - -
18 Hb_000084_130 0.1877805265 - - -
19 Hb_000683_090 0.1892815689 - - stress enhanced protein [Medicago truncatula]
20 Hb_012675_080 0.1893539604 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_007188_030 Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_007188_030--Hb_003656_150 Hb_002815_050 Hb_002815_050 Hb_007188_030--Hb_002815_050 Hb_006198_090 Hb_006198_090 Hb_007188_030--Hb_006198_090 Hb_177103_010 Hb_177103_010 Hb_007188_030--Hb_177103_010 Hb_003030_040 Hb_003030_040 Hb_007188_030--Hb_003030_040 Hb_005679_070 Hb_005679_070 Hb_007188_030--Hb_005679_070 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_003656_150--Hb_003030_040 Hb_002815_050--Hb_005679_070 Hb_002815_050--Hb_003030_040 Hb_002815_050--Hb_003656_150 Hb_022891_010 Hb_022891_010 Hb_002815_050--Hb_022891_010 Hb_068014_010 Hb_068014_010 Hb_002815_050--Hb_068014_010 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_002482_060 Hb_002482_060 Hb_006198_090--Hb_002482_060 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_177103_010--Hb_003656_150 Hb_177103_010--Hb_005679_070 Hb_177103_010--Hb_068014_010 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_005107_020 Hb_005107_020 Hb_003030_040--Hb_005107_020 Hb_003030_040--Hb_005679_070 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118813 0.0510486 0 1.20673 0.059926 2.40442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278484 0.218771 0.184448 0.318997 0.20346

CAGE analysis