Hb_005679_070

Information

Type -
Description -
Location Contig5679: 244021-248891
Sequence    

Annotation

kegg
ID mdm:103427254
description ABC transporter B family member 25, mitochondrial-like
nr
ID EPS67035.1
description hypothetical protein M569_07741, partial [Genlisea aurea]
swissprot
ID -
description -
trembl
ID S8CK19
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_07741 PE=4 SV=1
Gene Ontology
ID GO:0005524
description abc transporter b family member mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49183: 207483-249435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005679_070 0.0 - - hypothetical protein M569_07741, partial [Genlisea aurea]
2 Hb_002815_050 0.0957089002 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
3 Hb_000329_560 0.1192082395 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001998_140 0.1203255708 - - -
5 Hb_005085_030 0.1211130593 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
6 Hb_068014_010 0.1225563838 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
7 Hb_006663_090 0.1256261514 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
8 Hb_026228_010 0.1376736799 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007188_030 0.1414771573 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
10 Hb_177103_010 0.1425839816 - - PREDICTED: histone H2AX [Elaeis guineensis]
11 Hb_000810_020 0.1435571512 - - -
12 Hb_006198_090 0.1448783348 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
13 Hb_003030_040 0.1567959986 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
14 Hb_000825_030 0.1580996041 - - zinc binding dehydrogenase, putative [Ricinus communis]
15 Hb_002783_060 0.158881964 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
16 Hb_115477_010 0.1598615881 - - Protein dom-3, putative [Ricinus communis]
17 Hb_169170_010 0.1605194467 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
18 Hb_003688_110 0.1608806525 - - -
19 Hb_002482_060 0.1627892041 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
20 Hb_010565_040 0.1645952446 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_005679_070 Hb_005679_070 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_068014_010 Hb_068014_010 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090 Hb_003030_040 Hb_003030_040 Hb_002815_050--Hb_003030_040 Hb_007188_030 Hb_007188_030 Hb_002815_050--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_002815_050--Hb_003656_150 Hb_022891_010 Hb_022891_010 Hb_002815_050--Hb_022891_010 Hb_002815_050--Hb_068014_010 Hb_026228_010 Hb_026228_010 Hb_000329_560--Hb_026228_010 Hb_000074_060 Hb_000074_060 Hb_000329_560--Hb_000074_060 Hb_000329_560--Hb_005085_030 Hb_004060_030 Hb_004060_030 Hb_000329_560--Hb_004060_030 Hb_000329_560--Hb_006663_090 Hb_006198_090 Hb_006198_090 Hb_001998_140--Hb_006198_090 Hb_001998_140--Hb_007188_030 Hb_002482_060 Hb_002482_060 Hb_001998_140--Hb_002482_060 Hb_001998_140--Hb_026228_010 Hb_010565_040 Hb_010565_040 Hb_001998_140--Hb_010565_040 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.658024 0.356881 0.186719 3.60693 0.445922 6.89711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48611 1.06136 0.898284 1.32417 1.18944

CAGE analysis