Hb_004060_030

Information

Type -
Description -
Location Contig4060: 43795-50059
Sequence    

Annotation

kegg
ID rcu:RCOM_1334340
description nucleic acid binding protein, putative
nr
ID XP_012075514.1
description PREDICTED: primase homolog protein [Jatropha curcas]
swissprot
ID B5X582
description Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g30680 PE=1 SV=1
trembl
ID A0A067KIL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09131 PE=4 SV=1
Gene Ontology
ID GO:0003697
description primase homolog protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40302: 48072-48697 , PASA_asmbl_40303: 48892-50361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004060_030 0.0 - - PREDICTED: primase homolog protein [Jatropha curcas]
2 Hb_026745_020 0.1078915581 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
3 Hb_005085_030 0.1218977311 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
4 Hb_028420_020 0.1239449882 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
5 Hb_002174_050 0.1373003219 - - -
6 Hb_005862_010 0.1413912875 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
7 Hb_000329_560 0.1437439853 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003912_090 0.1452507327 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
9 Hb_005078_010 0.1466351033 - - Derlin-2, putative [Ricinus communis]
10 Hb_005608_030 0.1467524181 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
11 Hb_000193_270 0.148201462 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
12 Hb_009117_030 0.1494406189 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
13 Hb_004934_070 0.150057994 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
14 Hb_000038_080 0.1511995576 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
15 Hb_004445_040 0.1513720787 - - PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
16 Hb_020665_040 0.1526762939 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
17 Hb_007763_060 0.1533713856 - - BnaA02g23510D [Brassica napus]
18 Hb_000927_020 0.1562152864 - - synaptosomal associated protein, putative [Ricinus communis]
19 Hb_005701_060 0.1565222805 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
20 Hb_008447_030 0.1570916168 - - -

Gene co-expression network

sample Hb_004060_030 Hb_004060_030 Hb_026745_020 Hb_026745_020 Hb_004060_030--Hb_026745_020 Hb_005085_030 Hb_005085_030 Hb_004060_030--Hb_005085_030 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_002174_050 Hb_002174_050 Hb_004060_030--Hb_002174_050 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000329_560 Hb_000329_560 Hb_004060_030--Hb_000329_560 Hb_005701_060 Hb_005701_060 Hb_026745_020--Hb_005701_060 Hb_004303_040 Hb_004303_040 Hb_026745_020--Hb_004303_040 Hb_000193_270 Hb_000193_270 Hb_026745_020--Hb_000193_270 Hb_162603_010 Hb_162603_010 Hb_026745_020--Hb_162603_010 Hb_025194_100 Hb_025194_100 Hb_026745_020--Hb_025194_100 Hb_005679_070 Hb_005679_070 Hb_005085_030--Hb_005679_070 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010 Hb_003912_090 Hb_003912_090 Hb_028420_020--Hb_003912_090 Hb_021238_050 Hb_021238_050 Hb_028420_020--Hb_021238_050 Hb_028420_020--Hb_005862_010 Hb_020665_040 Hb_020665_040 Hb_028420_020--Hb_020665_040 Hb_005016_050 Hb_005016_050 Hb_028420_020--Hb_005016_050 Hb_003038_210 Hb_003038_210 Hb_028420_020--Hb_003038_210 Hb_001633_020 Hb_001633_020 Hb_002174_050--Hb_001633_020 Hb_002374_020 Hb_002374_020 Hb_002174_050--Hb_002374_020 Hb_001124_080 Hb_001124_080 Hb_002174_050--Hb_001124_080 Hb_005527_020 Hb_005527_020 Hb_002174_050--Hb_005527_020 Hb_004445_040 Hb_004445_040 Hb_002174_050--Hb_004445_040 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_144598_030 Hb_144598_030 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_000329_560--Hb_005679_070 Hb_026228_010 Hb_026228_010 Hb_000329_560--Hb_026228_010 Hb_000074_060 Hb_000074_060 Hb_000329_560--Hb_000074_060 Hb_000329_560--Hb_005085_030 Hb_000329_560--Hb_006663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09833 0.368995 0.56775 1.66047 0.715497 4.81751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68287 1.62376 0.754528 1.22136 1.55377

CAGE analysis