Hb_002174_050

Information

Type -
Description -
Location Contig2174: 52472-53482
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22471: 52885-53420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002174_050 0.0 - - -
2 Hb_001633_020 0.1365904228 - - F22C12.10, putative isoform 2 [Theobroma cacao]
3 Hb_004060_030 0.1373003219 - - PREDICTED: primase homolog protein [Jatropha curcas]
4 Hb_002374_020 0.140477892 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
5 Hb_001124_080 0.14349924 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
6 Hb_005527_020 0.149341119 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
7 Hb_004445_040 0.150229849 - - PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
8 Hb_001377_180 0.150971271 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
9 Hb_005078_010 0.153662833 - - Derlin-2, putative [Ricinus communis]
10 Hb_004934_070 0.1590604698 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
11 Hb_000155_180 0.1606079901 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
12 Hb_005608_030 0.1610274182 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
13 Hb_000284_110 0.1622351944 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
14 Hb_000676_080 0.1636094118 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
15 Hb_012395_180 0.1636718757 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
16 Hb_000080_060 0.1636786858 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
17 Hb_010180_010 0.1638735491 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
18 Hb_054745_010 0.1653205193 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000038_080 0.1689181595 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
20 Hb_143398_010 0.1693854952 - - PREDICTED: peter Pan-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_002174_050 Hb_002174_050 Hb_001633_020 Hb_001633_020 Hb_002174_050--Hb_001633_020 Hb_004060_030 Hb_004060_030 Hb_002174_050--Hb_004060_030 Hb_002374_020 Hb_002374_020 Hb_002174_050--Hb_002374_020 Hb_001124_080 Hb_001124_080 Hb_002174_050--Hb_001124_080 Hb_005527_020 Hb_005527_020 Hb_002174_050--Hb_005527_020 Hb_004445_040 Hb_004445_040 Hb_002174_050--Hb_004445_040 Hb_013405_040 Hb_013405_040 Hb_001633_020--Hb_013405_040 Hb_001633_020--Hb_001124_080 Hb_001673_010 Hb_001673_010 Hb_001633_020--Hb_001673_010 Hb_001377_180 Hb_001377_180 Hb_001633_020--Hb_001377_180 Hb_004846_200 Hb_004846_200 Hb_001633_020--Hb_004846_200 Hb_026745_020 Hb_026745_020 Hb_004060_030--Hb_026745_020 Hb_005085_030 Hb_005085_030 Hb_004060_030--Hb_005085_030 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000329_560 Hb_000329_560 Hb_004060_030--Hb_000329_560 Hb_002671_100 Hb_002671_100 Hb_002374_020--Hb_002671_100 Hb_004934_070 Hb_004934_070 Hb_002374_020--Hb_004934_070 Hb_144598_030 Hb_144598_030 Hb_002374_020--Hb_144598_030 Hb_001935_130 Hb_001935_130 Hb_002374_020--Hb_001935_130 Hb_005016_170 Hb_005016_170 Hb_002374_020--Hb_005016_170 Hb_002374_020--Hb_005862_010 Hb_001266_080 Hb_001266_080 Hb_001124_080--Hb_001266_080 Hb_000284_110 Hb_000284_110 Hb_001124_080--Hb_000284_110 Hb_071736_010 Hb_071736_010 Hb_001124_080--Hb_071736_010 Hb_004072_020 Hb_004072_020 Hb_001124_080--Hb_004072_020 Hb_004055_140 Hb_004055_140 Hb_001124_080--Hb_004055_140 Hb_002616_050 Hb_002616_050 Hb_001124_080--Hb_002616_050 Hb_000676_080 Hb_000676_080 Hb_005527_020--Hb_000676_080 Hb_001014_110 Hb_001014_110 Hb_005527_020--Hb_001014_110 Hb_004157_100 Hb_004157_100 Hb_005527_020--Hb_004157_100 Hb_001250_060 Hb_001250_060 Hb_005527_020--Hb_001250_060 Hb_000004_020 Hb_000004_020 Hb_005527_020--Hb_000004_020 Hb_054745_010 Hb_054745_010 Hb_005527_020--Hb_054745_010 Hb_005608_030 Hb_005608_030 Hb_004445_040--Hb_005608_030 Hb_005078_010 Hb_005078_010 Hb_004445_040--Hb_005078_010 Hb_004445_040--Hb_004060_030 Hb_013691_020 Hb_013691_020 Hb_004445_040--Hb_013691_020 Hb_010565_010 Hb_010565_010 Hb_004445_040--Hb_010565_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27182 0.104262 0.343443 1.19177 0.34629 1.98918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.995016 1.00497 0.375574 0.791832 0.62129

CAGE analysis