Hb_028420_020

Information

Type -
Description -
Location Contig28420: 15368-18376
Sequence    

Annotation

kegg
ID rcu:RCOM_1431170
description hypothetical protein
nr
ID XP_012089088.1
description PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
swissprot
ID Q84K79
description Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana GN=ACD22.3 PE=1 SV=1
trembl
ID A0A067JL24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23366 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29750: 15876-16180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028420_020 0.0 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
2 Hb_003912_090 0.0954537205 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
3 Hb_021238_050 0.1067673467 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005862_010 0.1089007126 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
5 Hb_020665_040 0.1134988599 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
6 Hb_005016_050 0.1142762328 - - -
7 Hb_003038_210 0.1158214594 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
8 Hb_000927_020 0.117564449 - - synaptosomal associated protein, putative [Ricinus communis]
9 Hb_002260_150 0.1191514058 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
10 Hb_002596_040 0.1203776337 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
11 Hb_002296_040 0.1210759672 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
12 Hb_026745_020 0.121669423 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
13 Hb_004060_030 0.1239449882 - - PREDICTED: primase homolog protein [Jatropha curcas]
14 Hb_000193_270 0.124083734 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
15 Hb_066768_010 0.1245257893 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_004072_020 0.1248446697 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
17 Hb_009117_030 0.1251899644 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
18 Hb_031089_040 0.1267372172 - - thioredoxin H-type 1 [Hevea brasiliensis]
19 Hb_005615_080 0.1269050601 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
20 Hb_002271_020 0.1270069418 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]

Gene co-expression network

sample Hb_028420_020 Hb_028420_020 Hb_003912_090 Hb_003912_090 Hb_028420_020--Hb_003912_090 Hb_021238_050 Hb_021238_050 Hb_028420_020--Hb_021238_050 Hb_005862_010 Hb_005862_010 Hb_028420_020--Hb_005862_010 Hb_020665_040 Hb_020665_040 Hb_028420_020--Hb_020665_040 Hb_005016_050 Hb_005016_050 Hb_028420_020--Hb_005016_050 Hb_003038_210 Hb_003038_210 Hb_028420_020--Hb_003038_210 Hb_003912_090--Hb_005862_010 Hb_144598_030 Hb_144598_030 Hb_003912_090--Hb_144598_030 Hb_003912_090--Hb_005016_050 Hb_003912_090--Hb_020665_040 Hb_002374_020 Hb_002374_020 Hb_003912_090--Hb_002374_020 Hb_003092_030 Hb_003092_030 Hb_021238_050--Hb_003092_030 Hb_006198_080 Hb_006198_080 Hb_021238_050--Hb_006198_080 Hb_037887_010 Hb_037887_010 Hb_021238_050--Hb_037887_010 Hb_000056_260 Hb_000056_260 Hb_021238_050--Hb_000056_260 Hb_000326_090 Hb_000326_090 Hb_021238_050--Hb_000326_090 Hb_002296_040 Hb_002296_040 Hb_021238_050--Hb_002296_040 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_020665_040--Hb_144598_030 Hb_002271_020 Hb_002271_020 Hb_020665_040--Hb_002271_020 Hb_002716_130 Hb_002716_130 Hb_020665_040--Hb_002716_130 Hb_005731_120 Hb_005731_120 Hb_020665_040--Hb_005731_120 Hb_000318_290 Hb_000318_290 Hb_020665_040--Hb_000318_290 Hb_033594_120 Hb_033594_120 Hb_020665_040--Hb_033594_120 Hb_009117_030 Hb_009117_030 Hb_005016_050--Hb_009117_030 Hb_023732_090 Hb_023732_090 Hb_005016_050--Hb_023732_090 Hb_027472_150 Hb_027472_150 Hb_005016_050--Hb_027472_150 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270 Hb_032225_010 Hb_032225_010 Hb_003038_210--Hb_032225_010 Hb_000111_380 Hb_000111_380 Hb_003038_210--Hb_000111_380 Hb_002473_130 Hb_002473_130 Hb_003038_210--Hb_002473_130 Hb_007101_300 Hb_007101_300 Hb_003038_210--Hb_007101_300 Hb_003038_210--Hb_002271_020 Hb_003038_210--Hb_020665_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.65871 0.426979 0.574563 1.73493 1.06428 3.44675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33718 1.72958 0.976442 1.29138 0.975114

CAGE analysis