Hb_003038_210

Information

Type -
Description -
Location Contig3038: 123318-128044
Sequence    

Annotation

kegg
ID cam:101492706
description eukaryotic translation initiation factor 2 subunit 3-like
nr
ID KJB34636.1
description hypothetical protein B456_006G076400 [Gossypium raimondii]
swissprot
ID Q24208
description Eukaryotic translation initiation factor 2 subunit 3 OS=Drosophila melanogaster GN=eIF-2gamma PE=2 SV=1
trembl
ID A0A0D2RYQ5
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G076400 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 2 subunit gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_210 0.0 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
2 Hb_032225_010 0.0860247043 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_000111_380 0.0914179271 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
4 Hb_002473_130 0.0967855666 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
5 Hb_007101_300 0.0980691025 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
6 Hb_002271_020 0.0985165159 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
7 Hb_020665_040 0.0989563417 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
8 Hb_005489_060 0.0996697034 - - Anamorsin, putative [Ricinus communis]
9 Hb_005914_080 0.10069302 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
10 Hb_002296_040 0.1014990026 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
11 Hb_000656_170 0.1041618785 - - lsm1, putative [Ricinus communis]
12 Hb_002662_030 0.1077299037 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
13 Hb_021238_050 0.1083188602 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000107_310 0.1095418343 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
15 Hb_143398_010 0.1095976031 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
16 Hb_000009_240 0.1100380549 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
17 Hb_003125_010 0.1107946319 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
18 Hb_031089_040 0.1121294498 - - thioredoxin H-type 1 [Hevea brasiliensis]
19 Hb_033594_120 0.1136793565 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
20 Hb_001287_080 0.113958316 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003038_210 Hb_003038_210 Hb_032225_010 Hb_032225_010 Hb_003038_210--Hb_032225_010 Hb_000111_380 Hb_000111_380 Hb_003038_210--Hb_000111_380 Hb_002473_130 Hb_002473_130 Hb_003038_210--Hb_002473_130 Hb_007101_300 Hb_007101_300 Hb_003038_210--Hb_007101_300 Hb_002271_020 Hb_002271_020 Hb_003038_210--Hb_002271_020 Hb_020665_040 Hb_020665_040 Hb_003038_210--Hb_020665_040 Hb_007881_030 Hb_007881_030 Hb_032225_010--Hb_007881_030 Hb_032225_010--Hb_007101_300 Hb_000092_170 Hb_000092_170 Hb_032225_010--Hb_000092_170 Hb_000696_330 Hb_000696_330 Hb_032225_010--Hb_000696_330 Hb_002701_020 Hb_002701_020 Hb_032225_010--Hb_002701_020 Hb_005731_050 Hb_005731_050 Hb_000111_380--Hb_005731_050 Hb_004108_070 Hb_004108_070 Hb_000111_380--Hb_004108_070 Hb_002601_110 Hb_002601_110 Hb_000111_380--Hb_002601_110 Hb_000656_170 Hb_000656_170 Hb_000111_380--Hb_000656_170 Hb_001140_370 Hb_001140_370 Hb_000111_380--Hb_001140_370 Hb_033594_120 Hb_033594_120 Hb_000111_380--Hb_033594_120 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_001279_150 Hb_001279_150 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_003389_040 Hb_003389_040 Hb_007101_300--Hb_003389_040 Hb_000032_380 Hb_000032_380 Hb_007101_300--Hb_000032_380 Hb_008226_060 Hb_008226_060 Hb_007101_300--Hb_008226_060 Hb_001225_080 Hb_001225_080 Hb_007101_300--Hb_001225_080 Hb_000417_040 Hb_000417_040 Hb_007101_300--Hb_000417_040 Hb_007101_300--Hb_005489_060 Hb_002271_020--Hb_143398_010 Hb_002271_020--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_002271_020--Hb_005489_060 Hb_002271_020--Hb_001279_150 Hb_144598_030 Hb_144598_030 Hb_020665_040--Hb_144598_030 Hb_020665_040--Hb_002271_020 Hb_002716_130 Hb_002716_130 Hb_020665_040--Hb_002716_130 Hb_005731_120 Hb_005731_120 Hb_020665_040--Hb_005731_120 Hb_000318_290 Hb_000318_290 Hb_020665_040--Hb_000318_290 Hb_020665_040--Hb_033594_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.574774 0.960525 0.795885 1.5071 1.10218 2.68896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94263 2.21138 1.33149 1.08351 0.739906

CAGE analysis