Hb_000032_380

Information

Type -
Description -
Location Contig32: 294324-298003
Sequence    

Annotation

kegg
ID rcu:RCOM_1692120
description hypothetical protein
nr
ID XP_002509970.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCT6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33729: 294429-298467 , PASA_asmbl_33730: 294429-297108 , PASA_asmbl_33731: 297200-298467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007101_300 0.0585349075 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
3 Hb_003389_040 0.0599229565 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
4 Hb_001278_100 0.0600933914 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
5 Hb_000417_040 0.0708322395 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
6 Hb_005054_350 0.073627471 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
7 Hb_008226_060 0.0773031645 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
8 Hb_006615_240 0.0795266587 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
9 Hb_005846_040 0.0804105306 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
10 Hb_000340_180 0.0818979022 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
11 Hb_001225_080 0.0827219043 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
12 Hb_001123_060 0.0839718249 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
13 Hb_000390_300 0.0843334709 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
14 Hb_000030_030 0.0850747734 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
15 Hb_007878_010 0.0851230072 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
16 Hb_000373_070 0.0863358543 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
17 Hb_000431_170 0.0868465941 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
18 Hb_164010_040 0.0871176615 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_010812_120 0.0874908589 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
20 Hb_004058_030 0.088637233 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000032_380 Hb_000032_380 Hb_007101_300 Hb_007101_300 Hb_000032_380--Hb_007101_300 Hb_003389_040 Hb_003389_040 Hb_000032_380--Hb_003389_040 Hb_001278_100 Hb_001278_100 Hb_000032_380--Hb_001278_100 Hb_000417_040 Hb_000417_040 Hb_000032_380--Hb_000417_040 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_008226_060 Hb_008226_060 Hb_000032_380--Hb_008226_060 Hb_007101_300--Hb_003389_040 Hb_007101_300--Hb_008226_060 Hb_001225_080 Hb_001225_080 Hb_007101_300--Hb_001225_080 Hb_007101_300--Hb_000417_040 Hb_005489_060 Hb_005489_060 Hb_007101_300--Hb_005489_060 Hb_003389_040--Hb_008226_060 Hb_003389_040--Hb_000417_040 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_012022_040 Hb_012022_040 Hb_001278_100--Hb_012022_040 Hb_000270_310 Hb_000270_310 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_164010_040 Hb_164010_040 Hb_001278_100--Hb_164010_040 Hb_000406_080 Hb_000406_080 Hb_000417_040--Hb_000406_080 Hb_005846_040 Hb_005846_040 Hb_000417_040--Hb_005846_040 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270 Hb_000120_470 Hb_000120_470 Hb_005054_350--Hb_000120_470 Hb_000768_090 Hb_000768_090 Hb_005054_350--Hb_000768_090 Hb_003435_020 Hb_003435_020 Hb_005054_350--Hb_003435_020 Hb_001758_100 Hb_001758_100 Hb_005054_350--Hb_001758_100 Hb_002078_140 Hb_002078_140 Hb_005054_350--Hb_002078_140 Hb_002205_110 Hb_002205_110 Hb_008226_060--Hb_002205_110 Hb_010997_080 Hb_010997_080 Hb_008226_060--Hb_010997_080 Hb_008226_060--Hb_000417_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3456 25.9658 24.46 33.4939 20.966 27.5868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.0352 46.1495 30.8515 25.0187 13.6554

CAGE analysis