Hb_002374_020

Information

Type -
Description -
Location Contig2374: 16207-19321
Sequence    

Annotation

kegg
ID pmum:103319774
description keratinocyte-associated protein 2
nr
ID XP_012078306.1
description PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
swissprot
ID Q5Q995
description Protein KRTCAP2 homolog OS=Ixodes scapularis PE=2 SV=1
trembl
ID M5XSV6
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013455mg PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein krtcap2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24833: 15650-19331 , PASA_asmbl_24834: 16875-17202 , PASA_asmbl_24835: 17427-17917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_020 0.0 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
2 Hb_002671_100 0.0901608683 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
3 Hb_004934_070 0.0909542447 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
4 Hb_144598_030 0.0956772237 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
5 Hb_001935_130 0.0984967647 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
6 Hb_005016_170 0.1020412675 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005862_010 0.103011763 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
8 Hb_010691_060 0.1049715744 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
9 Hb_003011_040 0.1052632434 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
10 Hb_010180_010 0.1060295846 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
11 Hb_003912_090 0.1072023937 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
12 Hb_041392_010 0.1073241548 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
13 Hb_004072_020 0.1092919018 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
14 Hb_001377_180 0.1097788691 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
15 Hb_000080_060 0.1105340281 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
16 Hb_001998_230 0.1130319732 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
17 Hb_000107_200 0.1135065696 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
18 Hb_150360_010 0.1150238111 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
19 Hb_010381_120 0.1163371095 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
20 Hb_137403_010 0.117650638 - - PREDICTED: actin-related protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_020 Hb_002374_020 Hb_002671_100 Hb_002671_100 Hb_002374_020--Hb_002671_100 Hb_004934_070 Hb_004934_070 Hb_002374_020--Hb_004934_070 Hb_144598_030 Hb_144598_030 Hb_002374_020--Hb_144598_030 Hb_001935_130 Hb_001935_130 Hb_002374_020--Hb_001935_130 Hb_005016_170 Hb_005016_170 Hb_002374_020--Hb_005016_170 Hb_005862_010 Hb_005862_010 Hb_002374_020--Hb_005862_010 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_004934_070--Hb_005862_010 Hb_000785_080 Hb_000785_080 Hb_004934_070--Hb_000785_080 Hb_003641_060 Hb_003641_060 Hb_004934_070--Hb_003641_060 Hb_004934_070--Hb_004881_020 Hb_004934_070--Hb_144598_030 Hb_020665_040 Hb_020665_040 Hb_144598_030--Hb_020665_040 Hb_144598_030--Hb_007594_130 Hb_144598_030--Hb_004117_130 Hb_144598_030--Hb_004881_020 Hb_002716_130 Hb_002716_130 Hb_144598_030--Hb_002716_130 Hb_000056_260 Hb_000056_260 Hb_001935_130--Hb_000056_260 Hb_000960_060 Hb_000960_060 Hb_001935_130--Hb_000960_060 Hb_001935_130--Hb_002671_100 Hb_001090_040 Hb_001090_040 Hb_001935_130--Hb_001090_040 Hb_158062_010 Hb_158062_010 Hb_001935_130--Hb_158062_010 Hb_024714_100 Hb_024714_100 Hb_001935_130--Hb_024714_100 Hb_001158_220 Hb_001158_220 Hb_005016_170--Hb_001158_220 Hb_000465_430 Hb_000465_430 Hb_005016_170--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_005016_170--Hb_003502_080 Hb_005016_170--Hb_002671_100 Hb_000956_030 Hb_000956_030 Hb_005016_170--Hb_000956_030 Hb_010691_060 Hb_010691_060 Hb_005016_170--Hb_010691_060 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_003912_090 Hb_003912_090 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.0023 18.1681 37.3833 97.6117 87.2455 177.649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.692 79.8606 38.4239 59.9535 34.2934

CAGE analysis