Hb_001935_130

Information

Type -
Description -
Location Contig1935: 96480-100458
Sequence    

Annotation

kegg
ID rcu:RCOM_1609670
description hypothetical protein
nr
ID XP_012083637.1
description PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14580 PE=4 SV=1
Gene Ontology
ID GO:0005634
description alanine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19316: 99439-100394 , PASA_asmbl_19317: 96816-100387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_130 0.0 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
2 Hb_000056_260 0.0813552298 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
3 Hb_000960_060 0.0815926211 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
4 Hb_002671_100 0.0864060952 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
5 Hb_001090_040 0.0886857831 - - Transmembrane protein 50A, putative [Ricinus communis]
6 Hb_158062_010 0.0914134137 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
7 Hb_024714_100 0.0942454756 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
8 Hb_011671_040 0.0971248913 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
9 Hb_003633_030 0.097518678 - - f-actin capping protein alpha, putative [Ricinus communis]
10 Hb_002271_020 0.0978406119 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
11 Hb_002374_020 0.0984967647 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
12 Hb_002445_120 0.0986524523 - - secretory carrier membrane protein, putative [Ricinus communis]
13 Hb_008406_190 0.0997992819 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
14 Hb_040262_010 0.0999138842 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
15 Hb_144598_030 0.1004422896 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
16 Hb_002053_140 0.1014772075 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
17 Hb_010180_010 0.1020537709 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
18 Hb_003665_060 0.1024367413 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
19 Hb_001828_190 0.1036737463 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
20 Hb_033594_120 0.103854954 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001935_130 Hb_001935_130 Hb_000056_260 Hb_000056_260 Hb_001935_130--Hb_000056_260 Hb_000960_060 Hb_000960_060 Hb_001935_130--Hb_000960_060 Hb_002671_100 Hb_002671_100 Hb_001935_130--Hb_002671_100 Hb_001090_040 Hb_001090_040 Hb_001935_130--Hb_001090_040 Hb_158062_010 Hb_158062_010 Hb_001935_130--Hb_158062_010 Hb_024714_100 Hb_024714_100 Hb_001935_130--Hb_024714_100 Hb_002445_120 Hb_002445_120 Hb_000056_260--Hb_002445_120 Hb_001279_150 Hb_001279_150 Hb_000056_260--Hb_001279_150 Hb_000120_670 Hb_000120_670 Hb_000056_260--Hb_000120_670 Hb_007017_030 Hb_007017_030 Hb_000056_260--Hb_007017_030 Hb_143398_010 Hb_143398_010 Hb_000056_260--Hb_143398_010 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_003428_030 Hb_003428_030 Hb_000960_060--Hb_003428_030 Hb_033594_120 Hb_033594_120 Hb_000960_060--Hb_033594_120 Hb_001828_190 Hb_001828_190 Hb_000960_060--Hb_001828_190 Hb_028227_020 Hb_028227_020 Hb_000960_060--Hb_028227_020 Hb_000093_160 Hb_000093_160 Hb_000960_060--Hb_000093_160 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_001090_040--Hb_001828_190 Hb_010655_010 Hb_010655_010 Hb_001090_040--Hb_010655_010 Hb_001090_040--Hb_000960_060 Hb_000329_030 Hb_000329_030 Hb_001090_040--Hb_000329_030 Hb_000331_450 Hb_000331_450 Hb_001090_040--Hb_000331_450 Hb_000205_300 Hb_000205_300 Hb_158062_010--Hb_000205_300 Hb_007059_010 Hb_007059_010 Hb_158062_010--Hb_007059_010 Hb_000146_050 Hb_000146_050 Hb_158062_010--Hb_000146_050 Hb_004310_020 Hb_004310_020 Hb_158062_010--Hb_004310_020 Hb_003964_070 Hb_003964_070 Hb_158062_010--Hb_003964_070 Hb_003549_150 Hb_003549_150 Hb_158062_010--Hb_003549_150 Hb_004072_020 Hb_004072_020 Hb_024714_100--Hb_004072_020 Hb_001998_230 Hb_001998_230 Hb_024714_100--Hb_001998_230 Hb_004182_040 Hb_004182_040 Hb_024714_100--Hb_004182_040 Hb_001789_070 Hb_001789_070 Hb_024714_100--Hb_001789_070 Hb_000529_190 Hb_000529_190 Hb_024714_100--Hb_000529_190 Hb_012799_160 Hb_012799_160 Hb_024714_100--Hb_012799_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3716 7.8401 16.3151 36.5138 34.5062 42.6679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2419 33.8035 18.398 19.9989 14.0829

CAGE analysis