Hb_005608_030

Information

Type -
Description -
Location Contig5608: 47394-48319
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_009618737.1
description PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1AZY6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48767: 47891-48155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005608_030 0.0 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
2 Hb_032458_010 0.0869606572 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
3 Hb_000679_150 0.1022684206 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
4 Hb_004619_050 0.1063967617 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
5 Hb_000364_080 0.1079820735 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
6 Hb_020000_020 0.1125777586 - - Troponin C, skeletal muscle, putative [Ricinus communis]
7 Hb_006663_070 0.1145139491 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
8 Hb_004934_070 0.11649186 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
9 Hb_000166_110 0.1184800914 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
10 Hb_000077_090 0.1198072205 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002067_020 0.1212181336 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001575_040 0.1212409794 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
13 Hb_154745_010 0.1223043658 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_005883_050 0.1226297777 - - PREDICTED: transportin-3 [Jatropha curcas]
15 Hb_011689_020 0.1248676872 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_000284_110 0.1250156729 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
17 Hb_002027_270 0.125142623 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
18 Hb_004370_030 0.1257126061 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
19 Hb_144598_030 0.1264010252 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
20 Hb_013691_020 0.1265978357 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_005608_030 Hb_005608_030 Hb_032458_010 Hb_032458_010 Hb_005608_030--Hb_032458_010 Hb_000679_150 Hb_000679_150 Hb_005608_030--Hb_000679_150 Hb_004619_050 Hb_004619_050 Hb_005608_030--Hb_004619_050 Hb_000364_080 Hb_000364_080 Hb_005608_030--Hb_000364_080 Hb_020000_020 Hb_020000_020 Hb_005608_030--Hb_020000_020 Hb_006663_070 Hb_006663_070 Hb_005608_030--Hb_006663_070 Hb_032458_010--Hb_004619_050 Hb_000429_120 Hb_000429_120 Hb_032458_010--Hb_000429_120 Hb_001866_110 Hb_001866_110 Hb_032458_010--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_032458_010--Hb_000889_020 Hb_009117_030 Hb_009117_030 Hb_032458_010--Hb_009117_030 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_007380_090 Hb_007380_090 Hb_000679_150--Hb_007380_090 Hb_003363_010 Hb_003363_010 Hb_000679_150--Hb_003363_010 Hb_000679_150--Hb_006663_070 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030 Hb_004447_060 Hb_004447_060 Hb_004619_050--Hb_004447_060 Hb_002027_270 Hb_002027_270 Hb_004619_050--Hb_002027_270 Hb_025012_010 Hb_025012_010 Hb_004619_050--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_004619_050--Hb_003428_070 Hb_004619_050--Hb_000429_120 Hb_002942_160 Hb_002942_160 Hb_000364_080--Hb_002942_160 Hb_000523_090 Hb_000523_090 Hb_000364_080--Hb_000523_090 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_134364_010 Hb_134364_010 Hb_000364_080--Hb_134364_010 Hb_002067_020 Hb_002067_020 Hb_000364_080--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_023386_040 Hb_023386_040 Hb_020000_020--Hb_023386_040 Hb_000820_170 Hb_000820_170 Hb_020000_020--Hb_000820_170 Hb_003609_030 Hb_003609_030 Hb_020000_020--Hb_003609_030 Hb_000179_030 Hb_000179_030 Hb_020000_020--Hb_000179_030 Hb_004370_030 Hb_004370_030 Hb_020000_020--Hb_004370_030 Hb_154745_010 Hb_154745_010 Hb_020000_020--Hb_154745_010 Hb_002601_130 Hb_002601_130 Hb_006663_070--Hb_002601_130 Hb_002092_090 Hb_002092_090 Hb_006663_070--Hb_002092_090 Hb_006663_070--Hb_004619_050 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11838 1.89228 1.45395 2.51953 2.24375 9.59602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06404 2.93505 2.24918 2.52553 2.63627

CAGE analysis