Hb_007380_090

Information

Type -
Description -
Location Contig7380: 115358-117954
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56241: 115396-117931 , PASA_asmbl_56242: 115337-117864 , PASA_asmbl_56243: 115447-117992 , PASA_asmbl_56244: 115916-116140
cDNA
(Sanger)
(ID:Location)		 029_M04.ab1: 115447-117754 , 032_H09.ab1: 115396-117931 , 036_I04.ab1: 115447-117838

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007380_090 0.0 - - -
2 Hb_000679_150 0.0897203168 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
3 Hb_000436_040 0.1035191804 - - PREDICTED: transportin-1 [Jatropha curcas]
4 Hb_002600_140 0.1041154437 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
5 Hb_000364_060 0.1160840529 - - JHL03K20.4 [Jatropha curcas]
6 Hb_003363_010 0.117249832 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001102_150 0.1174335693 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_006663_070 0.1204491737 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
9 Hb_000023_190 0.1255282793 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
10 Hb_020719_030 0.1260046149 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
11 Hb_002174_060 0.1269214781 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
12 Hb_002805_070 0.1279823676 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
13 Hb_002903_080 0.1303624093 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
14 Hb_007904_220 0.1310158298 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
15 Hb_002811_120 0.131327599 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
16 Hb_001488_410 0.131395123 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
17 Hb_001691_120 0.131737502 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
18 Hb_003405_050 0.131914735 - - -
19 Hb_009535_020 0.1319410465 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
20 Hb_000077_090 0.1325996042 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007380_090 Hb_007380_090 Hb_000679_150 Hb_000679_150 Hb_007380_090--Hb_000679_150 Hb_000436_040 Hb_000436_040 Hb_007380_090--Hb_000436_040 Hb_002600_140 Hb_002600_140 Hb_007380_090--Hb_002600_140 Hb_000364_060 Hb_000364_060 Hb_007380_090--Hb_000364_060 Hb_003363_010 Hb_003363_010 Hb_007380_090--Hb_003363_010 Hb_001102_150 Hb_001102_150 Hb_007380_090--Hb_001102_150 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_000679_150--Hb_003363_010 Hb_006663_070 Hb_006663_070 Hb_000679_150--Hb_006663_070 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030 Hb_021409_170 Hb_021409_170 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000347_130 Hb_000347_130 Hb_000436_040--Hb_000347_130 Hb_003464_020 Hb_003464_020 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_002893_150 Hb_002893_150 Hb_000436_040--Hb_002893_150 Hb_011716_020 Hb_011716_020 Hb_002600_140--Hb_011716_020 Hb_002974_060 Hb_002974_060 Hb_002600_140--Hb_002974_060 Hb_000236_310 Hb_000236_310 Hb_002600_140--Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_002600_140--Hb_005228_130 Hb_007026_040 Hb_007026_040 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_001863_110 Hb_001863_110 Hb_003363_010--Hb_001863_110 Hb_003434_060 Hb_003434_060 Hb_003363_010--Hb_003434_060 Hb_001609_010 Hb_001609_010 Hb_003363_010--Hb_001609_010 Hb_000316_030 Hb_000316_030 Hb_003363_010--Hb_000316_030 Hb_003363_010--Hb_002174_060 Hb_002805_070 Hb_002805_070 Hb_001102_150--Hb_002805_070 Hb_004732_020 Hb_004732_020 Hb_001102_150--Hb_004732_020 Hb_039253_010 Hb_039253_010 Hb_001102_150--Hb_039253_010 Hb_006114_030 Hb_006114_030 Hb_001102_150--Hb_006114_030 Hb_009117_030 Hb_009117_030 Hb_001102_150--Hb_009117_030 Hb_000424_240 Hb_000424_240 Hb_001102_150--Hb_000424_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52745 0.560838 0.829135 2.34937 3.66258 7.10591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85225 1.63323 1.69656 2.50819 2.24365

CAGE analysis