Hb_003363_010

Information

Type -
Description -
Location Contig3363: 3389-3694
Sequence    

Annotation

kegg
ID rcu:RCOM_0342710
description hypothetical protein
nr
ID XP_002523394.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FF75
description Protein SAD1/UNC-84 domain protein 1 OS=Arabidopsis thaliana GN=SUN1 PE=1 SV=1
trembl
ID B9SBM5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0342710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003363_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001863_110 0.0801383683 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_000679_150 0.0899308135 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
4 Hb_003434_060 0.0903675534 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
5 Hb_001609_010 0.0914358217 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
6 Hb_000316_030 0.0916788355 - - zinc finger protein, putative [Ricinus communis]
7 Hb_002174_060 0.0922439712 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
8 Hb_004881_050 0.094491983 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
9 Hb_000364_060 0.0951967347 - - JHL03K20.4 [Jatropha curcas]
10 Hb_000300_580 0.0957278513 - - PREDICTED: importin-5-like [Jatropha curcas]
11 Hb_002067_020 0.0965883055 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000390_060 0.0983541842 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
13 Hb_000436_040 0.0985180505 - - PREDICTED: transportin-1 [Jatropha curcas]
14 Hb_005883_050 0.0994773925 - - PREDICTED: transportin-3 [Jatropha curcas]
15 Hb_000034_050 0.0998970416 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
16 Hb_010423_020 0.1004557627 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
17 Hb_031862_180 0.1011237083 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
18 Hb_003711_040 0.1012550213 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
19 Hb_000048_140 0.1023489394 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
20 Hb_000372_040 0.1034364958 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003363_010 Hb_003363_010 Hb_001863_110 Hb_001863_110 Hb_003363_010--Hb_001863_110 Hb_000679_150 Hb_000679_150 Hb_003363_010--Hb_000679_150 Hb_003434_060 Hb_003434_060 Hb_003363_010--Hb_003434_060 Hb_001609_010 Hb_001609_010 Hb_003363_010--Hb_001609_010 Hb_000316_030 Hb_000316_030 Hb_003363_010--Hb_000316_030 Hb_002174_060 Hb_002174_060 Hb_003363_010--Hb_002174_060 Hb_000034_050 Hb_000034_050 Hb_001863_110--Hb_000034_050 Hb_000335_010 Hb_000335_010 Hb_001863_110--Hb_000335_010 Hb_003581_120 Hb_003581_120 Hb_001863_110--Hb_003581_120 Hb_010222_030 Hb_010222_030 Hb_001863_110--Hb_010222_030 Hb_002400_180 Hb_002400_180 Hb_001863_110--Hb_002400_180 Hb_001863_110--Hb_002174_060 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_007380_090 Hb_007380_090 Hb_000679_150--Hb_007380_090 Hb_006663_070 Hb_006663_070 Hb_000679_150--Hb_006663_070 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_003434_060--Hb_005883_050 Hb_003434_060--Hb_000316_030 Hb_063047_010 Hb_063047_010 Hb_001609_010--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001609_010--Hb_001040_160 Hb_001609_010--Hb_000316_030 Hb_001871_040 Hb_001871_040 Hb_001609_010--Hb_001871_040 Hb_004881_050 Hb_004881_050 Hb_001609_010--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_001609_010--Hb_000457_060 Hb_000316_030--Hb_001040_160 Hb_000316_030--Hb_000390_060 Hb_000316_030--Hb_063047_010 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090 Hb_004195_280 Hb_004195_280 Hb_002174_060--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.7241 26.0377 21.0073 38.5079 89.9001 163.829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.5751 32.2567 46.3417 25.3076 43.3645

CAGE analysis