Hb_002174_060

Information

Type -
Description -
Location Contig2174: 55833-57883
Sequence    

Annotation

kegg
ID tcc:TCM_038303
description Pentatricopeptide repeat-containing protein isoform 1
nr
ID XP_012078614.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
swissprot
ID Q3EDF8
description Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
trembl
ID A0A067KBB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13208 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g63330-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22473: 57002-57219 , PASA_asmbl_22474: 57497-57598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002174_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
2 Hb_004195_280 0.0504477477 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
3 Hb_000179_020 0.0628839407 - - amidase, putative [Ricinus communis]
4 Hb_000364_060 0.0680468578 - - JHL03K20.4 [Jatropha curcas]
5 Hb_010423_020 0.0685733526 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
6 Hb_001866_110 0.0738312478 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
7 Hb_000184_110 0.076176046 - - hypothetical protein F383_18769 [Gossypium arboreum]
8 Hb_011794_060 0.076810457 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000025_110 0.0771864375 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
10 Hb_003434_060 0.0772909988 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
11 Hb_001863_110 0.0789241861 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_009265_080 0.0791761778 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_000956_030 0.0800637183 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
14 Hb_000889_020 0.0807004836 - - ribosome biogenesis protein brix, putative [Ricinus communis]
15 Hb_004198_010 0.0821244257 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
16 Hb_108216_040 0.0846262341 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
17 Hb_005883_050 0.0849294206 - - PREDICTED: transportin-3 [Jatropha curcas]
18 Hb_002097_090 0.0872094535 - - Splicing factor 3A subunit, putative [Ricinus communis]
19 Hb_020719_030 0.0876059898 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
20 Hb_000034_050 0.0878660433 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]

Gene co-expression network

sample Hb_002174_060 Hb_002174_060 Hb_004195_280 Hb_004195_280 Hb_002174_060--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_004195_280--Hb_010423_020 Hb_009265_080 Hb_009265_080 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_003006_060 Hb_003006_060 Hb_004195_280--Hb_003006_060 Hb_004195_280--Hb_000179_020 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_002079_010 Hb_002079_010 Hb_000179_020--Hb_002079_010 Hb_000889_020 Hb_000889_020 Hb_000179_020--Hb_000889_020 Hb_000179_020--Hb_001866_110 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_010423_020--Hb_003006_060 Hb_010423_020--Hb_009265_080 Hb_010423_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_010423_020--Hb_134364_010 Hb_000429_120 Hb_000429_120 Hb_001866_110--Hb_000429_120 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_001866_110--Hb_000889_020 Hb_001017_040 Hb_001017_040 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_004452_100 Hb_004452_100 Hb_000184_110--Hb_004452_100 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10617 0.938112 0.912769 0.955342 3.18219 4.37413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0916 1.68836 1.53246 1.43094 1.57231

CAGE analysis