Hb_171900_100

Information

Type -
Description -
Location Contig171900: 30680-36143
Sequence    

Annotation

kegg
ID cit:102626458
description protein AATF-like
nr
ID XP_012083672.1
description PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
swissprot
ID Q9JKX4
description Protein AATF OS=Mus musculus GN=Aatf PE=1 SV=1
trembl
ID A0A067JY75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14603 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein aatf-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16101: 30751-36084 , PASA_asmbl_16104: 35219-36084 , PASA_asmbl_16105: 21540-35910 , PASA_asmbl_16108: 35626-36013
cDNA
(Sanger)
(ID:Location)		 017_I09.ab1: 35403-36084 , 020_H02.ab1: 21540-35910 , 031_F17.ab1: 35291-36084 , 040_P24.ab1: 33446-36084

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_100 0.0 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
2 Hb_004195_280 0.0678510834 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
3 Hb_143629_010 0.06918758 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_031939_010 0.0752820192 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
5 Hb_008887_050 0.0763135706 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_000236_320 0.0820068466 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
7 Hb_002007_350 0.0823339899 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
8 Hb_003006_060 0.0828434177 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
9 Hb_000141_060 0.0829945701 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
10 Hb_009265_080 0.0844897537 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
11 Hb_000322_050 0.0849070097 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_003044_100 0.0859545499 - - hypothetical protein F383_08446 [Gossypium arboreum]
13 Hb_003453_020 0.0870771666 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
14 Hb_004044_020 0.0887173107 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
15 Hb_000088_200 0.0916270078 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
16 Hb_012305_070 0.0917095113 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000085_060 0.0918771443 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
18 Hb_028639_060 0.0944779318 - - transporter, putative [Ricinus communis]
19 Hb_010423_020 0.0953189324 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
20 Hb_007026_030 0.095468596 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]

Gene co-expression network

sample Hb_171900_100 Hb_171900_100 Hb_004195_280 Hb_004195_280 Hb_171900_100--Hb_004195_280 Hb_143629_010 Hb_143629_010 Hb_171900_100--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_171900_100--Hb_031939_010 Hb_008887_050 Hb_008887_050 Hb_171900_100--Hb_008887_050 Hb_000236_320 Hb_000236_320 Hb_171900_100--Hb_000236_320 Hb_002007_350 Hb_002007_350 Hb_171900_100--Hb_002007_350 Hb_002174_060 Hb_002174_060 Hb_004195_280--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_004195_280--Hb_010423_020 Hb_009265_080 Hb_009265_080 Hb_004195_280--Hb_009265_080 Hb_003006_060 Hb_003006_060 Hb_004195_280--Hb_003006_060 Hb_000179_020 Hb_000179_020 Hb_004195_280--Hb_000179_020 Hb_143629_010--Hb_008887_050 Hb_001741_140 Hb_001741_140 Hb_143629_010--Hb_001741_140 Hb_005503_030 Hb_005503_030 Hb_143629_010--Hb_005503_030 Hb_000141_060 Hb_000141_060 Hb_143629_010--Hb_000141_060 Hb_143629_010--Hb_031939_010 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_008887_050--Hb_005503_030 Hb_008887_050--Hb_000290_020 Hb_008887_050--Hb_002007_350 Hb_018663_020 Hb_018663_020 Hb_000236_320--Hb_018663_020 Hb_012305_070 Hb_012305_070 Hb_000236_320--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_000236_320--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_000236_320--Hb_003384_030 Hb_003453_020 Hb_003453_020 Hb_000236_320--Hb_003453_020 Hb_004310_060 Hb_004310_060 Hb_000236_320--Hb_004310_060 Hb_002007_350--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_002007_350--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_002007_350--Hb_004678_060 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_000803_300 Hb_000803_300 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.7619 20.6377 31.8736 12.1984 84.9344 87.3448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.1336 46.6665 33.4469 36.0849 21.0704

CAGE analysis