Hb_000523_090

Information

Type -
Description -
Location Contig523: 130209-131824
Sequence    

Annotation

kegg
ID pmum:103342600
description uncharacterized LOC103342600
nr
ID XP_011011363.1
description PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067D775
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027708mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46902: 130235-134231
cDNA
(Sanger)
(ID:Location)		 002_C02.ab1: 130235-131042

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_090 0.0 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
2 Hb_002067_020 0.0647536843 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000364_080 0.0715115387 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
4 Hb_002174_060 0.0896976751 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
5 Hb_010423_020 0.089876672 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
6 Hb_000364_060 0.093156991 - - JHL03K20.4 [Jatropha curcas]
7 Hb_004195_280 0.1002456601 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
8 Hb_031862_180 0.1002766811 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
9 Hb_002044_060 0.1016391899 - - elongation factor ts, putative [Ricinus communis]
10 Hb_134364_010 0.1052552991 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
11 Hb_000640_320 0.1059886937 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
12 Hb_000866_470 0.1065712957 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
13 Hb_002942_160 0.1072004878 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_001437_100 0.1095127969 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
15 Hb_003363_010 0.1097442254 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012098_110 0.1098142681 - - Ribonuclease 3 [Gossypium arboreum]
17 Hb_000567_050 0.1100070195 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
18 Hb_000982_160 0.1103195284 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
19 Hb_007643_050 0.1112797242 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_010642_030 0.1115029439 - - zinc phosphodiesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000523_090 Hb_000523_090 Hb_002067_020 Hb_002067_020 Hb_000523_090--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000523_090--Hb_000364_080 Hb_002174_060 Hb_002174_060 Hb_000523_090--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_000523_090--Hb_010423_020 Hb_000364_060 Hb_000364_060 Hb_000523_090--Hb_000364_060 Hb_004195_280 Hb_004195_280 Hb_000523_090--Hb_004195_280 Hb_002067_020--Hb_000364_080 Hb_031862_180 Hb_031862_180 Hb_002067_020--Hb_031862_180 Hb_003363_010 Hb_003363_010 Hb_002067_020--Hb_003363_010 Hb_002067_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_002067_020--Hb_134364_010 Hb_002942_160 Hb_002942_160 Hb_000364_080--Hb_002942_160 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_000364_080--Hb_134364_010 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_002174_060--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_002174_060--Hb_000364_060 Hb_002174_060--Hb_010423_020 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_010423_020--Hb_004195_280 Hb_003006_060 Hb_003006_060 Hb_010423_020--Hb_003006_060 Hb_009265_080 Hb_009265_080 Hb_010423_020--Hb_009265_080 Hb_010423_020--Hb_000364_060 Hb_010423_020--Hb_134364_010 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_004195_280--Hb_003006_060 Hb_004195_280--Hb_000179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22983 2.12138 1.74427 1.47666 4.78487 8.6243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49076 2.81599 1.27429 1.77027 3.1044

CAGE analysis