Hb_005527_020

Information

Type -
Description -
Location Contig5527: 15418-21589
Sequence    

Annotation

kegg
ID rcu:RCOM_1614480
description hypothetical protein
nr
ID XP_012083450.1
description PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48307: 15408-17539
cDNA
(Sanger)
(ID:Location)		 046_N09.ab1: 15408-17539

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005527_020 0.0 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
2 Hb_000676_080 0.0814321538 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
3 Hb_001014_110 0.0939952368 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
4 Hb_004157_100 0.1082564303 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_001250_060 0.1166112349 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
6 Hb_000004_020 0.1174555774 - - conserved hypothetical protein [Ricinus communis]
7 Hb_054745_010 0.1209579022 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001191_110 0.1222295769 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
9 Hb_099878_030 0.1230193006 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
10 Hb_004117_160 0.1252625794 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
11 Hb_000074_060 0.1253546583 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
12 Hb_150023_010 0.1267650174 - - 50S ribosomal protein L2, putative [Ricinus communis]
13 Hb_000735_110 0.1280924749 - - fk506-binding protein, putative [Ricinus communis]
14 Hb_000167_080 0.1305081447 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
15 Hb_007403_060 0.131151301 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
16 Hb_000107_200 0.1321834419 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
17 Hb_038237_010 0.1328068574 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
18 Hb_129672_010 0.1398025946 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
19 Hb_006541_040 0.1399589319 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
20 Hb_143629_130 0.1410500388 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_005527_020 Hb_005527_020 Hb_000676_080 Hb_000676_080 Hb_005527_020--Hb_000676_080 Hb_001014_110 Hb_001014_110 Hb_005527_020--Hb_001014_110 Hb_004157_100 Hb_004157_100 Hb_005527_020--Hb_004157_100 Hb_001250_060 Hb_001250_060 Hb_005527_020--Hb_001250_060 Hb_000004_020 Hb_000004_020 Hb_005527_020--Hb_000004_020 Hb_054745_010 Hb_054745_010 Hb_005527_020--Hb_054745_010 Hb_000676_080--Hb_054745_010 Hb_000676_080--Hb_004157_100 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160 Hb_001014_110--Hb_004157_100 Hb_001014_110--Hb_000004_020 Hb_001014_110--Hb_000676_080 Hb_001014_110--Hb_054745_010 Hb_006541_040 Hb_006541_040 Hb_001014_110--Hb_006541_040 Hb_000107_230 Hb_000107_230 Hb_004157_100--Hb_000107_230 Hb_004157_100--Hb_054745_010 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_066768_010 Hb_066768_010 Hb_001250_060--Hb_066768_010 Hb_003929_270 Hb_003929_270 Hb_001250_060--Hb_003929_270 Hb_129672_010 Hb_129672_010 Hb_001250_060--Hb_129672_010 Hb_000735_110 Hb_000735_110 Hb_001250_060--Hb_000735_110 Hb_000326_090 Hb_000326_090 Hb_001250_060--Hb_000326_090 Hb_000167_080 Hb_000167_080 Hb_001250_060--Hb_000167_080 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_002226_080 Hb_002226_080 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_054745_010--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_054745_010--Hb_006153_070 Hb_000594_050 Hb_000594_050 Hb_054745_010--Hb_000594_050 Hb_002205_210 Hb_002205_210 Hb_054745_010--Hb_002205_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.30021 3.85458 5.07195 20.7846 7.46883 20.2063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.55399 10.7743 3.14713 9.59256 8.2973

CAGE analysis