Hb_002226_080

Information

Type -
Description -
Location Contig2226: 77245-85924
Sequence    

Annotation

kegg
ID cit:102626456
description uncharacterized LOC102626456
nr
ID XP_012081321.1
description PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LLR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09573 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23059: 77442-85785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002226_080 0.0 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
2 Hb_000056_130 0.0695066967 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
3 Hb_000004_020 0.0811269649 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009569_040 0.0823720404 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
5 Hb_000058_110 0.0857165296 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
6 Hb_002928_090 0.0867192462 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
7 Hb_001946_180 0.0885162706 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002902_130 0.0898039927 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
9 Hb_000890_230 0.0902508761 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
10 Hb_008406_180 0.0904829368 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
11 Hb_007765_040 0.0914307057 - - Cytosolic enolase isoform 3 [Theobroma cacao]
12 Hb_001104_130 0.0915550673 - - C-14 sterol reductase, putative [Ricinus communis]
13 Hb_001662_100 0.093690132 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
14 Hb_003097_140 0.0959552808 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
15 Hb_000390_050 0.0979550163 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
16 Hb_004102_170 0.0984606784 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
17 Hb_003878_200 0.1004806165 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
18 Hb_001491_030 0.1006132697 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
19 Hb_000049_020 0.100928341 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_001440_020 0.1010800854 - - exocyst componenet sec8, putative [Ricinus communis]

Gene co-expression network

sample Hb_002226_080 Hb_002226_080 Hb_000056_130 Hb_000056_130 Hb_002226_080--Hb_000056_130 Hb_000004_020 Hb_000004_020 Hb_002226_080--Hb_000004_020 Hb_009569_040 Hb_009569_040 Hb_002226_080--Hb_009569_040 Hb_000058_110 Hb_000058_110 Hb_002226_080--Hb_000058_110 Hb_002928_090 Hb_002928_090 Hb_002226_080--Hb_002928_090 Hb_001946_180 Hb_001946_180 Hb_002226_080--Hb_001946_180 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_000056_130--Hb_009569_040 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000004_020--Hb_000056_130 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100 Hb_009569_040--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_009569_040--Hb_000256_150 Hb_005725_130 Hb_005725_130 Hb_009569_040--Hb_005725_130 Hb_000049_020 Hb_000049_020 Hb_009569_040--Hb_000049_020 Hb_007481_010 Hb_007481_010 Hb_009569_040--Hb_007481_010 Hb_002414_050 Hb_002414_050 Hb_009569_040--Hb_002414_050 Hb_001440_020 Hb_001440_020 Hb_000058_110--Hb_001440_020 Hb_009252_030 Hb_009252_030 Hb_000058_110--Hb_009252_030 Hb_001491_030 Hb_001491_030 Hb_000058_110--Hb_001491_030 Hb_005977_100 Hb_005977_100 Hb_000058_110--Hb_005977_100 Hb_000359_190 Hb_000359_190 Hb_000058_110--Hb_000359_190 Hb_000014_040 Hb_000014_040 Hb_002928_090--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_002928_090--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_002928_090--Hb_001051_050 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_002928_090--Hb_009569_040 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.09816 6.00847 6.97965 23.2167 8.52095 11.079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.99796 5.43896 5.13083 9.53785 14.8539

CAGE analysis