Hb_006810_030

Information

Type -
Description -
Location Contig6810: 8571-13192
Sequence    

Annotation

kegg
ID tcc:TCM_045112
description Uncharacterized protein isoform 1
nr
ID XP_007010961.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FSV5
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_045112 PE=4 SV=1
Gene Ontology
ID GO:0005768
description phosphoserine aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53778: 9591-13032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006810_030 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_000056_130 0.0866044051 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
3 Hb_001191_110 0.1047322478 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_001491_030 0.1118524563 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
5 Hb_000136_140 0.1140405843 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
6 Hb_000184_070 0.1176517666 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
7 Hb_000071_150 0.1178755178 - - Stearoy-ACP desaturase [Ricinus communis]
8 Hb_001898_210 0.1195631664 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
9 Hb_000787_060 0.1196169383 - - thioredoxin domain-containing protein, putative [Ricinus communis]
10 Hb_000066_030 0.1225703647 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
11 Hb_000004_020 0.1227205692 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001051_050 0.1234456505 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002400_330 0.1235141346 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
14 Hb_009328_020 0.1237748146 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002079_030 0.128286757 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
16 Hb_000010_140 0.1296642809 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_002226_080 0.1299087727 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
18 Hb_007765_040 0.1301313394 - - Cytosolic enolase isoform 3 [Theobroma cacao]
19 Hb_004659_020 0.1316793165 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
20 Hb_002871_140 0.1320994462 - - hypothetical protein JCGZ_06847 [Jatropha curcas]

Gene co-expression network

sample Hb_006810_030 Hb_006810_030 Hb_000056_130 Hb_000056_130 Hb_006810_030--Hb_000056_130 Hb_001191_110 Hb_001191_110 Hb_006810_030--Hb_001191_110 Hb_001491_030 Hb_001491_030 Hb_006810_030--Hb_001491_030 Hb_000136_140 Hb_000136_140 Hb_006810_030--Hb_000136_140 Hb_000184_070 Hb_000184_070 Hb_006810_030--Hb_000184_070 Hb_000071_150 Hb_000071_150 Hb_006810_030--Hb_000071_150 Hb_002226_080 Hb_002226_080 Hb_000056_130--Hb_002226_080 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_009569_040 Hb_009569_040 Hb_000056_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_000696_010 Hb_000696_010 Hb_001191_110--Hb_000696_010 Hb_003671_010 Hb_003671_010 Hb_001191_110--Hb_003671_010 Hb_002375_040 Hb_002375_040 Hb_001191_110--Hb_002375_040 Hb_000107_080 Hb_000107_080 Hb_001191_110--Hb_000107_080 Hb_000146_040 Hb_000146_040 Hb_001191_110--Hb_000146_040 Hb_000594_050 Hb_000594_050 Hb_001191_110--Hb_000594_050 Hb_007765_040 Hb_007765_040 Hb_001491_030--Hb_007765_040 Hb_001491_030--Hb_000056_130 Hb_001491_030--Hb_002226_080 Hb_000058_110 Hb_000058_110 Hb_001491_030--Hb_000058_110 Hb_001675_190 Hb_001675_190 Hb_001491_030--Hb_001675_190 Hb_000359_310 Hb_000359_310 Hb_001491_030--Hb_000359_310 Hb_000365_100 Hb_000365_100 Hb_000136_140--Hb_000365_100 Hb_001512_040 Hb_001512_040 Hb_000136_140--Hb_001512_040 Hb_000244_180 Hb_000244_180 Hb_000136_140--Hb_000244_180 Hb_012573_050 Hb_012573_050 Hb_000136_140--Hb_012573_050 Hb_000836_290 Hb_000836_290 Hb_000136_140--Hb_000836_290 Hb_000352_300 Hb_000352_300 Hb_000184_070--Hb_000352_300 Hb_001789_030 Hb_001789_030 Hb_000184_070--Hb_001789_030 Hb_001703_050 Hb_001703_050 Hb_000184_070--Hb_001703_050 Hb_000163_090 Hb_000163_090 Hb_000184_070--Hb_000163_090 Hb_000371_090 Hb_000371_090 Hb_000184_070--Hb_000371_090 Hb_002675_030 Hb_002675_030 Hb_000184_070--Hb_002675_030 Hb_171334_010 Hb_171334_010 Hb_000071_150--Hb_171334_010 Hb_005895_010 Hb_005895_010 Hb_000071_150--Hb_005895_010 Hb_002871_140 Hb_002871_140 Hb_000071_150--Hb_002871_140 Hb_000072_090 Hb_000072_090 Hb_000071_150--Hb_000072_090 Hb_012098_150 Hb_012098_150 Hb_000071_150--Hb_012098_150 Hb_000071_150--Hb_000056_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86845 1.45453 6.56029 10.281 5.34811 8.88777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0539 3.18198 3.71558 4.12419 7.32254

CAGE analysis