Hb_171334_010

Information

Type -
Description -
Location Contig171334: 5214-12257
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11320g
description POPTRDRAFT_802863; hypothetical protein
nr
ID XP_012079194.1
description PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
swissprot
ID Q9SCS2
description CDPK-related kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=2 SV=1
trembl
ID A0A067KJ88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12360 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cdpk-related kinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16025: 5214-12247
cDNA
(Sanger)
(ID:Location)		 005_P24.ab1: 11508-12247 , 011_C06.ab1: 11487-12247 , 012_B13.ab1: 11574-12227 , 022_F18.ab1: 11627-12247 , 024_O09.ab1: 11631-12227 , 025_M07.ab1: 11482-12247 , 037_C21.ab1: 11537-12247 , 040_I15.ab1: 11489-12247

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171334_010 0.0 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
2 Hb_000071_150 0.0690956306 - - Stearoy-ACP desaturase [Ricinus communis]
3 Hb_002539_110 0.0728617895 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
4 Hb_005895_010 0.07632349 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
5 Hb_162275_040 0.0795067903 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000362_170 0.0887770097 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
7 Hb_013726_080 0.09618168 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
8 Hb_000836_290 0.0976684091 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_002675_030 0.0981474446 - - coatomer beta subunit, putative [Ricinus communis]
10 Hb_008014_040 0.0982510488 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
11 Hb_000069_570 0.099005478 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
12 Hb_005227_010 0.099921462 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
13 Hb_000022_190 0.100077517 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
14 Hb_000086_440 0.1003917238 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
15 Hb_008511_020 0.101257379 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
16 Hb_012215_010 0.1034416276 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
17 Hb_000347_040 0.1039880408 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
18 Hb_000640_070 0.105107579 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
19 Hb_001002_060 0.1061513306 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
20 Hb_004631_150 0.1068699244 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_171334_010 Hb_171334_010 Hb_000071_150 Hb_000071_150 Hb_171334_010--Hb_000071_150 Hb_002539_110 Hb_002539_110 Hb_171334_010--Hb_002539_110 Hb_005895_010 Hb_005895_010 Hb_171334_010--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_171334_010--Hb_162275_040 Hb_000362_170 Hb_000362_170 Hb_171334_010--Hb_000362_170 Hb_013726_080 Hb_013726_080 Hb_171334_010--Hb_013726_080 Hb_000071_150--Hb_005895_010 Hb_002871_140 Hb_002871_140 Hb_000071_150--Hb_002871_140 Hb_000072_090 Hb_000072_090 Hb_000071_150--Hb_000072_090 Hb_012098_150 Hb_012098_150 Hb_000071_150--Hb_012098_150 Hb_000056_130 Hb_000056_130 Hb_000071_150--Hb_000056_130 Hb_012215_010 Hb_012215_010 Hb_002539_110--Hb_012215_010 Hb_010272_010 Hb_010272_010 Hb_002539_110--Hb_010272_010 Hb_002539_110--Hb_000362_170 Hb_002539_110--Hb_005895_010 Hb_002539_110--Hb_162275_040 Hb_002539_110--Hb_013726_080 Hb_005895_010--Hb_000362_170 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_002014_040 Hb_002014_040 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_000086_440 Hb_000086_440 Hb_162275_040--Hb_000086_440 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_000362_170--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000362_170--Hb_001005_030 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_000915_080 Hb_000915_080 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_003430_090 Hb_003430_090 Hb_013726_080--Hb_003430_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7362 16.1534 29.0569 29.888 22.4992 24.8047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.46422 5.83919 15.3378 11.6897 28.2244

CAGE analysis