Hb_003430_090

Information

Type -
Description -
Location Contig3430: 101198-106296
Sequence    

Annotation

kegg
ID rcu:RCOM_1481420
description ATP binding protein, putative
nr
ID XP_002524217.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O22285
description Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1
trembl
ID B9SDZ8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1481420 PE=4 SV=1
Gene Ontology
ID GO:0000139
description probable methyltransferase pmt11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35875: 101241-105917 , PASA_asmbl_35877: 105970-106156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_090 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002750_050 0.0683343908 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
3 Hb_013726_080 0.0883145767 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
4 Hb_000392_370 0.0921572455 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
5 Hb_000207_190 0.0935371015 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
6 Hb_041290_010 0.1035137486 - - thioredoxin family protein [Populus trichocarpa]
7 Hb_000915_080 0.1076391375 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
8 Hb_002805_060 0.1108070518 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
9 Hb_017295_010 0.1123388044 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
10 Hb_002681_170 0.1135647087 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
11 Hb_002248_110 0.1178854509 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
12 Hb_001584_370 0.1224209313 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
13 Hb_004659_020 0.1227722562 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
14 Hb_000208_260 0.1229747148 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
15 Hb_002836_140 0.123509416 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
16 Hb_003104_040 0.1241848702 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
17 Hb_058999_030 0.1247576527 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
18 Hb_003687_210 0.1257140969 - - PREDICTED: malate dehydrogenase [Populus euphratica]
19 Hb_002539_110 0.1268179161 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
20 Hb_000915_110 0.1286256336 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]

Gene co-expression network

sample Hb_003430_090 Hb_003430_090 Hb_002750_050 Hb_002750_050 Hb_003430_090--Hb_002750_050 Hb_013726_080 Hb_013726_080 Hb_003430_090--Hb_013726_080 Hb_000392_370 Hb_000392_370 Hb_003430_090--Hb_000392_370 Hb_000207_190 Hb_000207_190 Hb_003430_090--Hb_000207_190 Hb_041290_010 Hb_041290_010 Hb_003430_090--Hb_041290_010 Hb_000915_080 Hb_000915_080 Hb_003430_090--Hb_000915_080 Hb_002750_050--Hb_000392_370 Hb_002750_050--Hb_041290_010 Hb_002750_050--Hb_000207_190 Hb_002750_050--Hb_013726_080 Hb_000915_110 Hb_000915_110 Hb_002750_050--Hb_000915_110 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001584_370 Hb_001584_370 Hb_000392_370--Hb_001584_370 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_000853_260 Hb_000853_260 Hb_000207_190--Hb_000853_260 Hb_000207_190--Hb_001584_370 Hb_000207_190--Hb_000392_370 Hb_002805_060 Hb_002805_060 Hb_000207_190--Hb_002805_060 Hb_041290_010--Hb_000915_110 Hb_012194_050 Hb_012194_050 Hb_041290_010--Hb_012194_050 Hb_004032_410 Hb_004032_410 Hb_041290_010--Hb_004032_410 Hb_023278_010 Hb_023278_010 Hb_041290_010--Hb_023278_010 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_002836_140 Hb_002836_140 Hb_000915_080--Hb_002836_140 Hb_000101_380 Hb_000101_380 Hb_000915_080--Hb_000101_380 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_002783_170 Hb_002783_170 Hb_000915_080--Hb_002783_170 Hb_000414_050 Hb_000414_050 Hb_000915_080--Hb_000414_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4866 5.76921 19.5444 20.9247 27.4986 28.6886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.16726 5.65513 7.06495 8.40184 16.3817

CAGE analysis