Hb_000853_260

Information

Type -
Description -
Location Contig853: 199173-202223
Sequence    

Annotation

kegg
ID cic:CICLE_v10020715mg
description hypothetical protein
nr
ID XP_012082838.1
description PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
swissprot
ID Q8VYF4
description Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1
trembl
ID A0A067K8W1
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_13985 PE=3 SV=1
Gene Ontology
ID GO:0016757
description probable galacturonosyltransferase-like 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60492: 199166-201937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_260 0.0 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
2 Hb_000207_190 0.1017872711 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
3 Hb_000392_370 0.1221871137 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
4 Hb_001584_370 0.1308251592 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
5 Hb_000556_150 0.1374394272 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
6 Hb_003430_090 0.1374683962 - - ATP binding protein, putative [Ricinus communis]
7 Hb_002092_110 0.1381250097 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
8 Hb_002805_060 0.1401776062 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
9 Hb_009485_020 0.1425129282 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
10 Hb_162378_010 0.1434264147 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
11 Hb_000091_060 0.1454908035 - - PREDICTED: galactose oxidase [Jatropha curcas]
12 Hb_002750_050 0.151455573 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
13 Hb_002681_170 0.1514711242 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
14 Hb_013726_080 0.1527942032 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_017295_010 0.1554071964 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
16 Hb_002539_110 0.1594830802 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
17 Hb_002249_120 0.1598272535 - - RNA-binding protein, putative [Ricinus communis]
18 Hb_001882_110 0.1612233372 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_028707_080 0.1614916704 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
20 Hb_000103_310 0.1620766463 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_260 Hb_000853_260 Hb_000207_190 Hb_000207_190 Hb_000853_260--Hb_000207_190 Hb_000392_370 Hb_000392_370 Hb_000853_260--Hb_000392_370 Hb_001584_370 Hb_001584_370 Hb_000853_260--Hb_001584_370 Hb_000556_150 Hb_000556_150 Hb_000853_260--Hb_000556_150 Hb_003430_090 Hb_003430_090 Hb_000853_260--Hb_003430_090 Hb_002092_110 Hb_002092_110 Hb_000853_260--Hb_002092_110 Hb_000207_190--Hb_003430_090 Hb_002750_050 Hb_002750_050 Hb_000207_190--Hb_002750_050 Hb_000207_190--Hb_001584_370 Hb_000207_190--Hb_000392_370 Hb_002805_060 Hb_002805_060 Hb_000207_190--Hb_002805_060 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_000392_370--Hb_002750_050 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_000392_370--Hb_001584_370 Hb_000392_370--Hb_003430_090 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_000021_040 Hb_000021_040 Hb_001584_370--Hb_000021_040 Hb_000002_490 Hb_000002_490 Hb_001584_370--Hb_000002_490 Hb_002249_120 Hb_002249_120 Hb_001584_370--Hb_002249_120 Hb_007426_150 Hb_007426_150 Hb_001584_370--Hb_007426_150 Hb_000933_020 Hb_000933_020 Hb_001584_370--Hb_000933_020 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_086022_010 Hb_086022_010 Hb_000556_150--Hb_086022_010 Hb_007919_080 Hb_007919_080 Hb_000556_150--Hb_007919_080 Hb_001501_080 Hb_001501_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_003430_090--Hb_002750_050 Hb_013726_080 Hb_013726_080 Hb_003430_090--Hb_013726_080 Hb_041290_010 Hb_041290_010 Hb_003430_090--Hb_041290_010 Hb_000915_080 Hb_000915_080 Hb_003430_090--Hb_000915_080 Hb_000347_270 Hb_000347_270 Hb_002092_110--Hb_000347_270 Hb_003104_040 Hb_003104_040 Hb_002092_110--Hb_003104_040 Hb_001153_050 Hb_001153_050 Hb_002092_110--Hb_001153_050 Hb_002092_110--Hb_002805_060 Hb_000156_160 Hb_000156_160 Hb_002092_110--Hb_000156_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1965 11.6824 25.6405 44.4519 56.0089 26.1249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2108 3.99718 10.9108 7.68147 21.8832

CAGE analysis