Hb_000556_150

Information

Type -
Description -
Location Contig556: 153054-154316
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06740g
description POPTRDRAFT_730906; Fasciclin-like arabinogalactan protein 8 precursor
nr
ID XP_011034618.1
description PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
swissprot
ID Q9LZX4
description Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1
trembl
ID B9IC18
description Fasciclin-like arabinogalactan protein 8 OS=Populus trichocarpa GN=POPTR_0014s06740g PE=4 SV=1
Gene Ontology
ID GO:0009505
description fasciclin-like arabinogalactan protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48519: 152939-154844
cDNA
(Sanger)
(ID:Location)		 003_C20.ab1: 152990-153804 , 008_C18.ab1: 152939-153671 , 014_J07.ab1: 152990-153823 , 020_N20.ab1: 152990-153821 , 021_C21.ab1: 152990-153775 , 023_L02.ab1: 152990-153568 , 033_D24.ab1: 152990-153742 , 035_M07.ab1: 152990-153784 , 038_C24.ab1: 152939-153752 , 053_J14.ab1: 152990-153821

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_150 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
2 Hb_000392_370 0.1057331479 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
3 Hb_005463_130 0.1107093643 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
4 Hb_086022_010 0.1140914133 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
5 Hb_007919_080 0.1196893301 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
6 Hb_001501_080 0.123271437 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
7 Hb_007904_210 0.1244985579 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
8 Hb_162378_010 0.1249109488 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
9 Hb_002217_380 0.126318871 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
10 Hb_007951_040 0.12644584 - - signal peptidase family protein [Populus trichocarpa]
11 Hb_000103_310 0.1280703511 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
12 Hb_002836_140 0.1288347668 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
13 Hb_058999_030 0.129851974 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
14 Hb_004466_040 0.1301444925 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
15 Hb_000608_110 0.1322271652 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
16 Hb_000096_080 0.1324389083 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
17 Hb_002876_320 0.1352284928 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
18 Hb_007592_030 0.1363161297 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_001584_370 0.1365738165 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
20 Hb_001486_170 0.1373248348 - - PREDICTED: syntaxin-132 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_150 Hb_000556_150 Hb_000392_370 Hb_000392_370 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_086022_010 Hb_086022_010 Hb_000556_150--Hb_086022_010 Hb_007919_080 Hb_007919_080 Hb_000556_150--Hb_007919_080 Hb_001501_080 Hb_001501_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_002750_050 Hb_002750_050 Hb_000392_370--Hb_002750_050 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001584_370 Hb_001584_370 Hb_000392_370--Hb_001584_370 Hb_003430_090 Hb_003430_090 Hb_000392_370--Hb_003430_090 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_001486_170 Hb_001486_170 Hb_005463_130--Hb_001486_170 Hb_002054_050 Hb_002054_050 Hb_005463_130--Hb_002054_050 Hb_005463_130--Hb_001501_080 Hb_013726_080 Hb_013726_080 Hb_005463_130--Hb_013726_080 Hb_000751_030 Hb_000751_030 Hb_005463_130--Hb_000751_030 Hb_008921_010 Hb_008921_010 Hb_005463_130--Hb_008921_010 Hb_002217_380 Hb_002217_380 Hb_086022_010--Hb_002217_380 Hb_004466_040 Hb_004466_040 Hb_086022_010--Hb_004466_040 Hb_000608_110 Hb_000608_110 Hb_086022_010--Hb_000608_110 Hb_008511_060 Hb_008511_060 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_000416_050 Hb_000416_050 Hb_007919_080--Hb_000416_050 Hb_007919_080--Hb_001486_170 Hb_002836_140 Hb_002836_140 Hb_007919_080--Hb_002836_140 Hb_000022_200 Hb_000022_200 Hb_007919_080--Hb_000022_200 Hb_002900_080 Hb_002900_080 Hb_007919_080--Hb_002900_080 Hb_001501_080--Hb_000751_030 Hb_001501_080--Hb_002054_050 Hb_000392_230 Hb_000392_230 Hb_001501_080--Hb_000392_230 Hb_007007_040 Hb_007007_040 Hb_001501_080--Hb_007007_040 Hb_003760_030 Hb_003760_030 Hb_001501_080--Hb_003760_030 Hb_000300_600 Hb_000300_600 Hb_007904_210--Hb_000300_600 Hb_003206_090 Hb_003206_090 Hb_007904_210--Hb_003206_090 Hb_000072_090 Hb_000072_090 Hb_007904_210--Hb_000072_090 Hb_000371_090 Hb_000371_090 Hb_007904_210--Hb_000371_090 Hb_007904_210--Hb_000022_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.819 46.8396 162.273 224.977 199.661 129.526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.0016 48.0752 105.06 45.6922 60.3229

CAGE analysis