Hb_000300_600

Information

Type -
Description -
Location Contig300: 558330-561957
Sequence    

Annotation

kegg
ID rcu:RCOM_1120940
description tubulin alpha chain, putative
nr
ID XP_002525416.1
description tubulin alpha chain, putative [Ricinus communis]
swissprot
ID O22349
description Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1
trembl
ID B9SHE7
description Tubulin alpha chain, putative OS=Ricinus communis GN=RCOM_1120940 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin alpha-3 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31626: 558278-561972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_600 0.0 - - tubulin alpha chain, putative [Ricinus communis]
2 Hb_003777_200 0.0749098331 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
3 Hb_000371_090 0.0922412559 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
4 Hb_001507_120 0.0975914496 - - transcription factor, putative [Ricinus communis]
5 Hb_007904_210 0.0988283279 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
6 Hb_001269_330 0.1018823569 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
7 Hb_003206_090 0.1021952393 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
8 Hb_079526_040 0.1039864365 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
9 Hb_011282_060 0.1066200011 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
10 Hb_000317_040 0.1080497242 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
11 Hb_001633_200 0.1105263859 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
12 Hb_002351_030 0.1119191609 - - catalytic, putative [Ricinus communis]
13 Hb_011214_160 0.1125662863 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
14 Hb_000352_120 0.1128445229 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
15 Hb_007638_020 0.1135379764 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
16 Hb_000066_030 0.1136187991 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
17 Hb_000352_300 0.1137568296 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
18 Hb_000101_080 0.1156373094 - - PREDICTED: protein CREG1 [Jatropha curcas]
19 Hb_003998_040 0.1157538143 - - organic anion transporter, putative [Ricinus communis]
20 Hb_000205_140 0.1168283453 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_600 Hb_000300_600 Hb_003777_200 Hb_003777_200 Hb_000300_600--Hb_003777_200 Hb_000371_090 Hb_000371_090 Hb_000300_600--Hb_000371_090 Hb_001507_120 Hb_001507_120 Hb_000300_600--Hb_001507_120 Hb_007904_210 Hb_007904_210 Hb_000300_600--Hb_007904_210 Hb_001269_330 Hb_001269_330 Hb_000300_600--Hb_001269_330 Hb_003206_090 Hb_003206_090 Hb_000300_600--Hb_003206_090 Hb_000317_040 Hb_000317_040 Hb_003777_200--Hb_000317_040 Hb_000046_500 Hb_000046_500 Hb_003777_200--Hb_000046_500 Hb_011214_160 Hb_011214_160 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_003777_200--Hb_001507_120 Hb_003998_040 Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_000371_090--Hb_011214_160 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030 Hb_001633_200 Hb_001633_200 Hb_001507_120--Hb_001633_200 Hb_001957_010 Hb_001957_010 Hb_001507_120--Hb_001957_010 Hb_065968_010 Hb_065968_010 Hb_001507_120--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_001507_120--Hb_000395_280 Hb_000260_510 Hb_000260_510 Hb_001507_120--Hb_000260_510 Hb_007904_210--Hb_003206_090 Hb_000072_090 Hb_000072_090 Hb_007904_210--Hb_000072_090 Hb_007904_210--Hb_000371_090 Hb_000022_200 Hb_000022_200 Hb_007904_210--Hb_000022_200 Hb_000556_150 Hb_000556_150 Hb_007904_210--Hb_000556_150 Hb_007481_010 Hb_007481_010 Hb_001269_330--Hb_007481_010 Hb_000256_150 Hb_000256_150 Hb_001269_330--Hb_000256_150 Hb_001087_030 Hb_001087_030 Hb_001269_330--Hb_001087_030 Hb_019181_040 Hb_019181_040 Hb_001269_330--Hb_019181_040 Hb_012498_010 Hb_012498_010 Hb_001269_330--Hb_012498_010 Hb_001269_330--Hb_000046_500 Hb_000352_120 Hb_000352_120 Hb_003206_090--Hb_000352_120 Hb_003206_090--Hb_003777_200 Hb_002473_050 Hb_002473_050 Hb_003206_090--Hb_002473_050 Hb_003206_090--Hb_000317_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0237 6.22324 24.555 31.7903 15.5157 11.8923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3952 7.21481 21.8371 19.9586 17.0032

CAGE analysis