Hb_002473_050

Information

Type -
Description -
Location Contig2473: 53359-57429
Sequence    

Annotation

kegg
ID rcu:RCOM_0861180
description catalytic, putative (EC:2.4.1.224)
nr
ID XP_002522880.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID B9SA61
description Catalytic, putative OS=Ricinus communis GN=RCOM_0861180 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable glycosyltransferase at5g03795

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25715: 53673-57422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002473_050 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_000261_210 0.0527707774 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_000054_040 0.075418439 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
4 Hb_025668_010 0.0872371458 - - unnamed protein product [Coffea canephora]
5 Hb_000101_080 0.0879201626 - - PREDICTED: protein CREG1 [Jatropha curcas]
6 Hb_007982_030 0.0924409182 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]
7 Hb_002351_030 0.0926714765 - - catalytic, putative [Ricinus communis]
8 Hb_001002_060 0.0928954882 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
9 Hb_000184_070 0.0953488087 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
10 Hb_020141_040 0.0959273864 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
11 Hb_001677_200 0.0960768897 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000371_090 0.0973582063 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
13 Hb_003206_090 0.0975407423 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
14 Hb_001512_040 0.0986622952 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_023313_040 0.0993946264 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
16 Hb_002675_030 0.1002057567 - - coatomer beta subunit, putative [Ricinus communis]
17 Hb_011214_160 0.1026064475 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
18 Hb_000161_210 0.1028349887 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
19 Hb_000903_010 0.1035246205 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
20 Hb_002326_040 0.1046865524 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]

Gene co-expression network

sample Hb_002473_050 Hb_002473_050 Hb_000261_210 Hb_000261_210 Hb_002473_050--Hb_000261_210 Hb_000054_040 Hb_000054_040 Hb_002473_050--Hb_000054_040 Hb_025668_010 Hb_025668_010 Hb_002473_050--Hb_025668_010 Hb_000101_080 Hb_000101_080 Hb_002473_050--Hb_000101_080 Hb_007982_030 Hb_007982_030 Hb_002473_050--Hb_007982_030 Hb_002351_030 Hb_002351_030 Hb_002473_050--Hb_002351_030 Hb_000261_210--Hb_000054_040 Hb_001002_060 Hb_001002_060 Hb_000261_210--Hb_001002_060 Hb_000261_210--Hb_025668_010 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_000503_020 Hb_000503_020 Hb_000054_040--Hb_000503_020 Hb_000320_290 Hb_000320_290 Hb_000054_040--Hb_000320_290 Hb_001246_130 Hb_001246_130 Hb_000054_040--Hb_001246_130 Hb_005062_110 Hb_005062_110 Hb_000054_040--Hb_005062_110 Hb_023313_040 Hb_023313_040 Hb_025668_010--Hb_023313_040 Hb_025668_010--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_025668_010--Hb_004096_060 Hb_005730_010 Hb_005730_010 Hb_025668_010--Hb_005730_010 Hb_002942_210 Hb_002942_210 Hb_025668_010--Hb_002942_210 Hb_001512_040 Hb_001512_040 Hb_000101_080--Hb_001512_040 Hb_000260_460 Hb_000260_460 Hb_000101_080--Hb_000260_460 Hb_032202_220 Hb_032202_220 Hb_000101_080--Hb_032202_220 Hb_000703_190 Hb_000703_190 Hb_000101_080--Hb_000703_190 Hb_079526_040 Hb_079526_040 Hb_000101_080--Hb_079526_040 Hb_000078_140 Hb_000078_140 Hb_000101_080--Hb_000078_140 Hb_000161_210 Hb_000161_210 Hb_007982_030--Hb_000161_210 Hb_001821_150 Hb_001821_150 Hb_007982_030--Hb_001821_150 Hb_001789_030 Hb_001789_030 Hb_007982_030--Hb_001789_030 Hb_002675_030 Hb_002675_030 Hb_007982_030--Hb_002675_030 Hb_001552_030 Hb_001552_030 Hb_007982_030--Hb_001552_030 Hb_000579_240 Hb_000579_240 Hb_007982_030--Hb_000579_240 Hb_002351_030--Hb_001002_060 Hb_002351_030--Hb_000371_090 Hb_001227_130 Hb_001227_130 Hb_002351_030--Hb_001227_130 Hb_003119_090 Hb_003119_090 Hb_002351_030--Hb_003119_090 Hb_001252_090 Hb_001252_090 Hb_002351_030--Hb_001252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79135 4.75505 9.42354 11.6601 8.46521 4.77462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15251 2.99259 5.19628 5.95013 6.71107

CAGE analysis