Hb_001227_130

Information

Type -
Description -
Location Contig1227: 187362-197650
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11750g
description hypothetical protein
nr
ID XP_012075300.1
description PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
swissprot
ID Q9LDR4
description Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2
trembl
ID A0A067KTZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09468 PE=4 SV=1
Gene Ontology
ID GO:0016020
description delta -sterol reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06916: 187426-197568 , PASA_asmbl_06917: 192468-192651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_130 0.0 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
2 Hb_000445_050 0.0801747784 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
3 Hb_000963_040 0.0821938247 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
4 Hb_003119_090 0.0823119559 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
5 Hb_000879_180 0.0826067343 - - XPA-binding protein, putative [Ricinus communis]
6 Hb_011282_060 0.0841876702 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
7 Hb_002351_030 0.0851182688 - - catalytic, putative [Ricinus communis]
8 Hb_000163_090 0.086047313 - - gamma-tubulin complex component, putative [Ricinus communis]
9 Hb_002876_320 0.0871276234 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
10 Hb_001501_080 0.0880731657 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
11 Hb_005797_010 0.0881805711 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
12 Hb_002783_170 0.0892272964 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
13 Hb_002398_030 0.0903977552 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_003897_040 0.0930273479 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
15 Hb_005460_050 0.0933471026 - - COR413-PM2, putative [Ricinus communis]
16 Hb_000139_530 0.0934840771 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023313_040 0.0944250377 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
18 Hb_003185_010 0.0949225374 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
19 Hb_001269_330 0.0958862292 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
20 Hb_000696_010 0.0969822942 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]

Gene co-expression network

sample Hb_001227_130 Hb_001227_130 Hb_000445_050 Hb_000445_050 Hb_001227_130--Hb_000445_050 Hb_000963_040 Hb_000963_040 Hb_001227_130--Hb_000963_040 Hb_003119_090 Hb_003119_090 Hb_001227_130--Hb_003119_090 Hb_000879_180 Hb_000879_180 Hb_001227_130--Hb_000879_180 Hb_011282_060 Hb_011282_060 Hb_001227_130--Hb_011282_060 Hb_002351_030 Hb_002351_030 Hb_001227_130--Hb_002351_030 Hb_002398_030 Hb_002398_030 Hb_000445_050--Hb_002398_030 Hb_007592_030 Hb_007592_030 Hb_000445_050--Hb_007592_030 Hb_008120_030 Hb_008120_030 Hb_000445_050--Hb_008120_030 Hb_009049_020 Hb_009049_020 Hb_000445_050--Hb_009049_020 Hb_002942_060 Hb_002942_060 Hb_000445_050--Hb_002942_060 Hb_058999_030 Hb_058999_030 Hb_000445_050--Hb_058999_030 Hb_030982_030 Hb_030982_030 Hb_000963_040--Hb_030982_030 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_000600_060 Hb_000600_060 Hb_000963_040--Hb_000600_060 Hb_000963_040--Hb_003119_090 Hb_016347_020 Hb_016347_020 Hb_000963_040--Hb_016347_020 Hb_007007_040 Hb_007007_040 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_003119_090--Hb_030982_030 Hb_000096_120 Hb_000096_120 Hb_000879_180--Hb_000096_120 Hb_000567_190 Hb_000567_190 Hb_000879_180--Hb_000567_190 Hb_010407_050 Hb_010407_050 Hb_000879_180--Hb_010407_050 Hb_001377_310 Hb_001377_310 Hb_000879_180--Hb_001377_310 Hb_012506_030 Hb_012506_030 Hb_000879_180--Hb_012506_030 Hb_004096_180 Hb_004096_180 Hb_000879_180--Hb_004096_180 Hb_052805_010 Hb_052805_010 Hb_011282_060--Hb_052805_010 Hb_006570_160 Hb_006570_160 Hb_011282_060--Hb_006570_160 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330 Hb_010407_140 Hb_010407_140 Hb_011282_060--Hb_010407_140 Hb_000261_210 Hb_000261_210 Hb_002351_030--Hb_000261_210 Hb_001002_060 Hb_001002_060 Hb_002351_030--Hb_001002_060 Hb_000371_090 Hb_000371_090 Hb_002351_030--Hb_000371_090 Hb_002351_030--Hb_003119_090 Hb_001252_090 Hb_001252_090 Hb_002351_030--Hb_001252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19431 5.93978 13.3185 15.1729 10.4698 10.3172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.64336 5.61192 7.22242 8.57714 4.88245

CAGE analysis