Hb_000963_040

Information

Type -
Description -
Location Contig963: 41807-46423
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01920g
description POPTRDRAFT_723538; thioredoxin family protein
nr
ID XP_012064825.1
description PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
swissprot
ID Q9FF55
description Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=1 SV=1
trembl
ID A0A067LHH9
description Protein disulfide-isomerase OS=Jatropha curcas GN=JCGZ_05522 PE=3 SV=1
Gene Ontology
ID GO:0005774
description protein disulfide isomerase-like 1-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63822: 41972-46190 , PASA_asmbl_63823: 44564-46129
cDNA
(Sanger)
(ID:Location)		 045_O07.ab1: 42093-43634

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_040 0.0 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
2 Hb_030982_030 0.0715481869 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
3 Hb_023313_040 0.0745541323 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
4 Hb_000600_060 0.0795415981 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
5 Hb_003119_090 0.0821320695 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
6 Hb_001227_130 0.0821938247 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
7 Hb_016347_020 0.0827085188 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
8 Hb_016777_040 0.0845013145 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
9 Hb_000163_090 0.0847990447 - - gamma-tubulin complex component, putative [Ricinus communis]
10 Hb_000803_270 0.0873184377 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
11 Hb_025668_010 0.0875114998 - - unnamed protein product [Coffea canephora]
12 Hb_005730_010 0.0886475403 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
13 Hb_000260_470 0.0898170329 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
14 Hb_012506_030 0.0912182392 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_004096_060 0.0912988653 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
16 Hb_000120_280 0.0923944637 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_001002_060 0.0927867087 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
18 Hb_000330_060 0.093280027 - - PREDICTED: adenosine kinase [Jatropha curcas]
19 Hb_001141_310 0.0936230559 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
20 Hb_002326_110 0.0940034126 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]

Gene co-expression network

sample Hb_000963_040 Hb_000963_040 Hb_030982_030 Hb_030982_030 Hb_000963_040--Hb_030982_030 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_000600_060 Hb_000600_060 Hb_000963_040--Hb_000600_060 Hb_003119_090 Hb_003119_090 Hb_000963_040--Hb_003119_090 Hb_001227_130 Hb_001227_130 Hb_000963_040--Hb_001227_130 Hb_016347_020 Hb_016347_020 Hb_000963_040--Hb_016347_020 Hb_030982_030--Hb_003119_090 Hb_030982_030--Hb_016347_020 Hb_030982_030--Hb_001227_130 Hb_030982_030--Hb_000600_060 Hb_004324_400 Hb_004324_400 Hb_030982_030--Hb_004324_400 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_000702_090 Hb_000702_090 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_000460_080 Hb_000460_080 Hb_000600_060--Hb_000460_080 Hb_000120_280 Hb_000120_280 Hb_000600_060--Hb_000120_280 Hb_000352_300 Hb_000352_300 Hb_000600_060--Hb_000352_300 Hb_001141_310 Hb_001141_310 Hb_000600_060--Hb_001141_310 Hb_000477_050 Hb_000477_050 Hb_000600_060--Hb_000477_050 Hb_007007_040 Hb_007007_040 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_000445_050 Hb_000445_050 Hb_001227_130--Hb_000445_050 Hb_001227_130--Hb_003119_090 Hb_000879_180 Hb_000879_180 Hb_001227_130--Hb_000879_180 Hb_011282_060 Hb_011282_060 Hb_001227_130--Hb_011282_060 Hb_002351_030 Hb_002351_030 Hb_001227_130--Hb_002351_030 Hb_000684_080 Hb_000684_080 Hb_016347_020--Hb_000684_080 Hb_000330_060 Hb_000330_060 Hb_016347_020--Hb_000330_060 Hb_016347_020--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_016347_020--Hb_004096_060 Hb_016347_020--Hb_003119_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8787 16.3592 37.6316 35.5627 25.2017 17.0829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0295 13.1348 15.7856 30.5264 16.4833

CAGE analysis