Hb_001252_090

Information

Type -
Description -
Location Contig1252: 86516-90386
Sequence    

Annotation

kegg
ID rcu:RCOM_1482320
description mannose-1-phosphate guanyltransferase, putative (EC:2.7.7.13)
nr
ID AGI78460.1
description GDP-D-mannose pyrophosphorylase [Camellia sinensis]
swissprot
ID O22287
description Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1
trembl
ID M9RTL9
description GDP-D-mannose pyrophosphorylase OS=Camellia sinensis GN=GMP PE=2 SV=1
Gene Ontology
ID GO:0004475
description mannose-1-phosphate guanylyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07720: 86582-90384 , PASA_asmbl_07721: 86870-87148 , PASA_asmbl_07723: 87588-87952
cDNA
(Sanger)
(ID:Location)		 010_B17.ab1: 86650-89503

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_090 0.0 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
2 Hb_001454_230 0.0779260907 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
3 Hb_002351_030 0.0905771104 - - catalytic, putative [Ricinus communis]
4 Hb_001087_030 0.0906253523 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
5 Hb_000854_040 0.0913533263 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
6 Hb_001863_360 0.096892892 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
7 Hb_000317_040 0.0974141237 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
8 Hb_159809_030 0.1003005137 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
9 Hb_000172_510 0.1040497022 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
10 Hb_000197_020 0.104268338 - - PREDICTED: protein RER1A [Jatropha curcas]
11 Hb_003777_200 0.1045640833 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
12 Hb_012395_170 0.1058882993 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003929_170 0.1062318017 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
14 Hb_011214_160 0.1068613725 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
15 Hb_007638_020 0.106928612 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
16 Hb_000390_250 0.107339375 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
17 Hb_000705_230 0.1079662659 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
18 Hb_001269_330 0.1081518918 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_000146_040 0.1086457629 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
20 Hb_006573_040 0.1086776805 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001252_090 Hb_001252_090 Hb_001454_230 Hb_001454_230 Hb_001252_090--Hb_001454_230 Hb_002351_030 Hb_002351_030 Hb_001252_090--Hb_002351_030 Hb_001087_030 Hb_001087_030 Hb_001252_090--Hb_001087_030 Hb_000854_040 Hb_000854_040 Hb_001252_090--Hb_000854_040 Hb_001863_360 Hb_001863_360 Hb_001252_090--Hb_001863_360 Hb_000317_040 Hb_000317_040 Hb_001252_090--Hb_000317_040 Hb_012262_030 Hb_012262_030 Hb_001454_230--Hb_012262_030 Hb_000703_190 Hb_000703_190 Hb_001454_230--Hb_000703_190 Hb_000046_500 Hb_000046_500 Hb_001454_230--Hb_000046_500 Hb_011214_160 Hb_011214_160 Hb_001454_230--Hb_011214_160 Hb_000023_300 Hb_000023_300 Hb_001454_230--Hb_000023_300 Hb_000261_210 Hb_000261_210 Hb_002351_030--Hb_000261_210 Hb_001002_060 Hb_001002_060 Hb_002351_030--Hb_001002_060 Hb_000371_090 Hb_000371_090 Hb_002351_030--Hb_000371_090 Hb_001227_130 Hb_001227_130 Hb_002351_030--Hb_001227_130 Hb_003119_090 Hb_003119_090 Hb_002351_030--Hb_003119_090 Hb_003929_170 Hb_003929_170 Hb_001087_030--Hb_003929_170 Hb_004754_050 Hb_004754_050 Hb_001087_030--Hb_004754_050 Hb_001269_330 Hb_001269_330 Hb_001087_030--Hb_001269_330 Hb_000139_530 Hb_000139_530 Hb_001087_030--Hb_000139_530 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_000049_020 Hb_000049_020 Hb_001087_030--Hb_000049_020 Hb_003777_200 Hb_003777_200 Hb_000854_040--Hb_003777_200 Hb_000854_040--Hb_000317_040 Hb_001633_200 Hb_001633_200 Hb_000854_040--Hb_001633_200 Hb_000854_040--Hb_001454_230 Hb_000748_030 Hb_000748_030 Hb_000854_040--Hb_000748_030 Hb_000390_250 Hb_000390_250 Hb_001863_360--Hb_000390_250 Hb_001257_030 Hb_001257_030 Hb_001863_360--Hb_001257_030 Hb_005214_140 Hb_005214_140 Hb_001863_360--Hb_005214_140 Hb_000103_340 Hb_000103_340 Hb_001863_360--Hb_000103_340 Hb_000856_040 Hb_000856_040 Hb_001863_360--Hb_000856_040 Hb_003498_080 Hb_003498_080 Hb_001863_360--Hb_003498_080 Hb_000317_040--Hb_003777_200 Hb_000317_040--Hb_000703_190 Hb_019181_040 Hb_019181_040 Hb_000317_040--Hb_019181_040 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000317_040--Hb_000046_500 Hb_012506_030 Hb_012506_030 Hb_000317_040--Hb_012506_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.9407 57.6159 102.667 144.064 52.147 56.6322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9503 44.0339 80.1249 45.0066 46.9304

CAGE analysis