Hb_000503_020

Information

Type -
Description -
Location Contig503: 80154-93328
Sequence    

Annotation

kegg
ID rcu:RCOM_0218300
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012087842.1
description PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
swissprot
ID Q8W4I7
description Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2
trembl
ID A0A067JWP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25004 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45912: 80116-93385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000503_020 0.0 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
2 Hb_000054_040 0.0617620741 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
3 Hb_005062_110 0.0661147278 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
4 Hb_000320_290 0.0757248966 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
5 Hb_000085_260 0.0774247931 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
6 Hb_006120_050 0.0802977334 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
7 Hb_001246_130 0.0822548783 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
8 Hb_000258_220 0.0824428107 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
9 Hb_010042_030 0.0875901775 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
10 Hb_159809_030 0.0903108963 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
11 Hb_000261_210 0.094320045 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_001159_030 0.0945185847 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
13 Hb_121089_030 0.0949773463 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
14 Hb_008014_040 0.095032733 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
15 Hb_030982_010 0.0951892523 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011310_110 0.0964424847 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
17 Hb_000098_050 0.0967990484 - - BnaCnng11900D [Brassica napus]
18 Hb_000035_220 0.0969523817 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
19 Hb_002045_170 0.0975455887 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
20 Hb_003209_130 0.0977225215 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_000503_020 Hb_000503_020 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_005062_110 Hb_005062_110 Hb_000503_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_000261_210 Hb_000261_210 Hb_000054_040--Hb_000261_210 Hb_000054_040--Hb_000320_290 Hb_002473_050 Hb_002473_050 Hb_000054_040--Hb_002473_050 Hb_000054_040--Hb_001246_130 Hb_000054_040--Hb_005062_110 Hb_005062_110--Hb_000085_260 Hb_010042_030 Hb_010042_030 Hb_005062_110--Hb_010042_030 Hb_001159_030 Hb_001159_030 Hb_005062_110--Hb_001159_030 Hb_000622_110 Hb_000622_110 Hb_005062_110--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_005062_110--Hb_002486_050 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_030982_010 Hb_030982_010 Hb_000320_290--Hb_030982_010 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_000085_260--Hb_001159_030 Hb_000085_260--Hb_010042_030 Hb_000085_260--Hb_000098_050 Hb_000679_100 Hb_000679_100 Hb_000085_260--Hb_000679_100 Hb_011310_110 Hb_011310_110 Hb_006120_050--Hb_011310_110 Hb_006120_050--Hb_030982_010 Hb_010672_020 Hb_010672_020 Hb_006120_050--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_006120_050--Hb_002272_240 Hb_002687_180 Hb_002687_180 Hb_006120_050--Hb_002687_180 Hb_006120_050--Hb_121089_030 Hb_002007_260 Hb_002007_260 Hb_001246_130--Hb_002007_260 Hb_001246_130--Hb_030982_010 Hb_001246_130--Hb_006120_050 Hb_002552_040 Hb_002552_040 Hb_001246_130--Hb_002552_040 Hb_002045_170 Hb_002045_170 Hb_001246_130--Hb_002045_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3072 18.0047 29.3368 43.5547 14.5419 17.8055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11839 5.78637 9.42272 16.5317 21.6631

CAGE analysis