Hb_000679_100

Information

Type -
Description -
Location Contig679: 73856-75160
Sequence    

Annotation

kegg
ID rcu:RCOM_0924370
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative
nr
ID XP_012076592.1
description PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
swissprot
ID Q3E6T0
description Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1
trembl
ID B9RP61
description Triose phosphate/phosphate translocator, non-green plastid, chloroplast, putative OS=Ricinus communis GN=RCOM_0924370 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at5g25400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 009_M07.ab1: 74296-75042 , 010_C20.ab1: 74152-74903 , 015_F14.ab1: 74554-74903 , 035_P16.ab1: 74543-75046

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_100 0.0 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
2 Hb_000085_260 0.0784110566 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
3 Hb_001097_040 0.0838777 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
4 Hb_007286_020 0.0852669209 - - hypothetical protein L484_010675 [Morus notabilis]
5 Hb_001051_070 0.0861731135 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
6 Hb_000023_300 0.0892492004 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
7 Hb_010042_030 0.0939784378 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
8 Hb_001347_050 0.0942474964 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_001159_030 0.0953656324 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
10 Hb_000265_140 0.0953759427 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
11 Hb_135757_010 0.0963636446 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
12 Hb_007409_040 0.1018240797 - - actin family protein [Populus trichocarpa]
13 Hb_121089_030 0.1031872829 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
14 Hb_004480_020 0.1031978853 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
15 Hb_000984_310 0.1033382047 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
16 Hb_002486_050 0.1035199419 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
17 Hb_003038_040 0.1042778929 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_004987_020 0.1071126863 - - -
19 Hb_000256_230 0.1099737489 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
20 Hb_000622_340 0.109992925 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_100 Hb_000679_100 Hb_000085_260 Hb_000085_260 Hb_000679_100--Hb_000085_260 Hb_001097_040 Hb_001097_040 Hb_000679_100--Hb_001097_040 Hb_007286_020 Hb_007286_020 Hb_000679_100--Hb_007286_020 Hb_001051_070 Hb_001051_070 Hb_000679_100--Hb_001051_070 Hb_000023_300 Hb_000023_300 Hb_000679_100--Hb_000023_300 Hb_010042_030 Hb_010042_030 Hb_000679_100--Hb_010042_030 Hb_001159_030 Hb_001159_030 Hb_000085_260--Hb_001159_030 Hb_000085_260--Hb_010042_030 Hb_005062_110 Hb_005062_110 Hb_000085_260--Hb_005062_110 Hb_000098_050 Hb_000098_050 Hb_000085_260--Hb_000098_050 Hb_000503_020 Hb_000503_020 Hb_000085_260--Hb_000503_020 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_001097_040--Hb_000023_300 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_007286_020--Hb_001051_070 Hb_004102_170 Hb_004102_170 Hb_007286_020--Hb_004102_170 Hb_086639_080 Hb_086639_080 Hb_007286_020--Hb_086639_080 Hb_007286_020--Hb_010042_030 Hb_002486_050 Hb_002486_050 Hb_007286_020--Hb_002486_050 Hb_000477_100 Hb_000477_100 Hb_001051_070--Hb_000477_100 Hb_001051_070--Hb_000023_300 Hb_011214_160 Hb_011214_160 Hb_001051_070--Hb_011214_160 Hb_003998_040 Hb_003998_040 Hb_001051_070--Hb_003998_040 Hb_012262_030 Hb_012262_030 Hb_000023_300--Hb_012262_030 Hb_000227_160 Hb_000227_160 Hb_000023_300--Hb_000227_160 Hb_010672_020 Hb_010672_020 Hb_000023_300--Hb_010672_020 Hb_008748_030 Hb_008748_030 Hb_000023_300--Hb_008748_030 Hb_010042_030--Hb_001159_030 Hb_010042_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3489 83.2491 68.5466 175.857 36.7991 45.2786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3781 19.8767 54.7727 77.1723 57.4139

CAGE analysis