Hb_010042_030

Information

Type -
Description -
Location Contig10042: 44537-52652
Sequence    

Annotation

kegg
ID pmum:103325488
description UDP-N-acetylglucosamine diphosphorylase 1
nr
ID XP_012081840.1
description PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
swissprot
ID Q940S3
description UDP-N-acetylglucosamine diphosphorylase 1 OS=Arabidopsis thaliana GN=GLCNAC1PUT1 PE=1 SV=1
trembl
ID A0A067K3C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19379 PE=4 SV=1
Gene Ontology
ID GO:0070569
description udp-n-acetylglucosamine diphosphorylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00305: 29881-52702
cDNA
(Sanger)
(ID:Location)		 012_B20.ab1: 31134-48827 , 025_B24.ab1: 31022-48827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010042_030 0.0 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
2 Hb_000085_260 0.0513127689 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
3 Hb_001159_030 0.0582811568 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
4 Hb_005062_110 0.062759746 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
5 Hb_002007_260 0.065609136 - - beta-mannosidase, putative [Ricinus communis]
6 Hb_000579_130 0.0667235144 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000320_290 0.068060121 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
8 Hb_003038_040 0.0737536137 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
9 Hb_121089_030 0.0759439355 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
10 Hb_000212_420 0.0764266559 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
11 Hb_007137_050 0.0778021487 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_007286_020 0.079590372 - - hypothetical protein L484_010675 [Morus notabilis]
13 Hb_000017_230 0.0800166227 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
14 Hb_030982_010 0.0806235366 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001246_130 0.0840885031 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
16 Hb_188063_050 0.0842516629 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
17 Hb_001097_040 0.085095079 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
18 Hb_000098_050 0.0851314126 - - BnaCnng11900D [Brassica napus]
19 Hb_010315_020 0.0852833151 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
20 Hb_001558_040 0.0865260119 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_010042_030 Hb_010042_030 Hb_000085_260 Hb_000085_260 Hb_010042_030--Hb_000085_260 Hb_001159_030 Hb_001159_030 Hb_010042_030--Hb_001159_030 Hb_005062_110 Hb_005062_110 Hb_010042_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290 Hb_000085_260--Hb_001159_030 Hb_000085_260--Hb_005062_110 Hb_000098_050 Hb_000098_050 Hb_000085_260--Hb_000098_050 Hb_000503_020 Hb_000503_020 Hb_000085_260--Hb_000503_020 Hb_000679_100 Hb_000679_100 Hb_000085_260--Hb_000679_100 Hb_001159_030--Hb_005062_110 Hb_001159_030--Hb_002007_260 Hb_003038_040 Hb_003038_040 Hb_001159_030--Hb_003038_040 Hb_001097_040 Hb_001097_040 Hb_001159_030--Hb_001097_040 Hb_005062_110--Hb_000503_020 Hb_000622_110 Hb_000622_110 Hb_005062_110--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_005062_110--Hb_002486_050 Hb_001246_130 Hb_001246_130 Hb_002007_260--Hb_001246_130 Hb_001085_290 Hb_001085_290 Hb_002007_260--Hb_001085_290 Hb_001558_040 Hb_001558_040 Hb_002007_260--Hb_001558_040 Hb_030982_010 Hb_030982_010 Hb_002007_260--Hb_030982_010 Hb_001085_080 Hb_001085_080 Hb_000579_130--Hb_001085_080 Hb_000579_130--Hb_001558_040 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_007137_050 Hb_007137_050 Hb_000579_130--Hb_007137_050 Hb_000579_130--Hb_002007_260 Hb_000054_040 Hb_000054_040 Hb_000320_290--Hb_000054_040 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_000320_290--Hb_030982_010 Hb_000320_290--Hb_000098_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0496 29.7327 30.2367 56.7911 16.3045 28.2401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8549 9.56364 14.9028 32.0887 30.5551

CAGE analysis