Hb_000579_240

Information

Type -
Description -
Location Contig579: 260479-266150
Sequence    

Annotation

kegg
ID rcu:RCOM_1595280
description phosphatidylinositol transporter, putative
nr
ID XP_002510428.1
description phosphatidylinositol transporter, putative [Ricinus communis]
swissprot
ID F4IHJ0
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 OS=Arabidopsis thaliana GN=SFH8 PE=2 SV=1
trembl
ID B9R7Y5
description Phosphatidylinositol transporter, putative OS=Ricinus communis GN=RCOM_1595280 PE=4 SV=1
Gene Ontology
ID GO:0005622
description sec14p-like phosphatidylinositol transfer family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49795: 259835-259936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_240 0.0 - - phosphatidylinositol transporter, putative [Ricinus communis]
2 Hb_000264_350 0.0753561333 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
3 Hb_002675_030 0.0765964466 - - coatomer beta subunit, putative [Ricinus communis]
4 Hb_010294_010 0.0855285621 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
5 Hb_005227_010 0.0888406275 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
6 Hb_007982_030 0.0896541033 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]
7 Hb_008511_020 0.0910772338 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
8 Hb_000004_030 0.0950249414 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
9 Hb_000184_070 0.0984736595 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
10 Hb_000960_040 0.0987968884 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
11 Hb_000086_440 0.101201263 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
12 Hb_001789_030 0.1014493275 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
13 Hb_012330_010 0.10244247 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
14 Hb_003417_010 0.1033182027 - - PREDICTED: protein TPLATE [Jatropha curcas]
15 Hb_002631_070 0.1038486986 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
16 Hb_002784_030 0.1050751374 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
17 Hb_001440_020 0.1066642627 - - exocyst componenet sec8, putative [Ricinus communis]
18 Hb_001821_150 0.1068449499 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
19 Hb_001488_220 0.1070411294 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_000562_050 0.1092863492 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_240 Hb_000579_240 Hb_000264_350 Hb_000264_350 Hb_000579_240--Hb_000264_350 Hb_002675_030 Hb_002675_030 Hb_000579_240--Hb_002675_030 Hb_010294_010 Hb_010294_010 Hb_000579_240--Hb_010294_010 Hb_005227_010 Hb_005227_010 Hb_000579_240--Hb_005227_010 Hb_007982_030 Hb_007982_030 Hb_000579_240--Hb_007982_030 Hb_008511_020 Hb_008511_020 Hb_000579_240--Hb_008511_020 Hb_000004_030 Hb_000004_030 Hb_000264_350--Hb_000004_030 Hb_000960_040 Hb_000960_040 Hb_000264_350--Hb_000960_040 Hb_000264_350--Hb_002675_030 Hb_000183_050 Hb_000183_050 Hb_000264_350--Hb_000183_050 Hb_001821_150 Hb_001821_150 Hb_000264_350--Hb_001821_150 Hb_002675_030--Hb_008511_020 Hb_001440_020 Hb_001440_020 Hb_002675_030--Hb_001440_020 Hb_002675_030--Hb_000960_040 Hb_002675_030--Hb_001821_150 Hb_000667_030 Hb_000667_030 Hb_010294_010--Hb_000667_030 Hb_002301_300 Hb_002301_300 Hb_010294_010--Hb_002301_300 Hb_002026_150 Hb_002026_150 Hb_010294_010--Hb_002026_150 Hb_011228_010 Hb_011228_010 Hb_010294_010--Hb_011228_010 Hb_010294_010--Hb_000960_040 Hb_012330_010 Hb_012330_010 Hb_010294_010--Hb_012330_010 Hb_001109_060 Hb_001109_060 Hb_005227_010--Hb_001109_060 Hb_000086_440 Hb_000086_440 Hb_005227_010--Hb_000086_440 Hb_000008_270 Hb_000008_270 Hb_005227_010--Hb_000008_270 Hb_017295_010 Hb_017295_010 Hb_005227_010--Hb_017295_010 Hb_002539_110 Hb_002539_110 Hb_005227_010--Hb_002539_110 Hb_162275_040 Hb_162275_040 Hb_005227_010--Hb_162275_040 Hb_000161_210 Hb_000161_210 Hb_007982_030--Hb_000161_210 Hb_007982_030--Hb_001821_150 Hb_001789_030 Hb_001789_030 Hb_007982_030--Hb_001789_030 Hb_007982_030--Hb_002675_030 Hb_001552_030 Hb_001552_030 Hb_007982_030--Hb_001552_030 Hb_008511_020--Hb_001440_020 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.62935 5.31136 7.20639 14.1129 10.7715 7.8801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12368 2.91364 7.39217 9.77797 13.756

CAGE analysis