Hb_000004_030

Information

Type -
Description -
Location Contig4: 36535-67403
Sequence    

Annotation

kegg
ID tcc:TCM_006451
description Hedgehog receptor, putative isoform 1
nr
ID XP_012067168.1
description PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
swissprot
ID P56941
description Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
trembl
ID A0A067LC10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03098 PE=4 SV=1
Gene Ontology
ID GO:0016021
description niemann-pick c1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39803: 59933-67273 , PASA_asmbl_39804: 6913-61088 , PASA_asmbl_39806: 65449-67113 , PASA_asmbl_39807: 52093-61137
cDNA
(Sanger)
(ID:Location)		 014_M02.ab1: 65371-67271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000004_030 0.0 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
2 Hb_000264_350 0.0619958211 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
3 Hb_000960_040 0.065301764 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
4 Hb_041828_010 0.0706676473 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
5 Hb_002391_290 0.0727398259 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
6 Hb_004659_020 0.075814534 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
7 Hb_001862_140 0.0760378101 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
8 Hb_000362_150 0.080556674 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
9 Hb_000780_190 0.082569706 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
10 Hb_000284_120 0.0860124684 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
11 Hb_000345_360 0.0862313123 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
12 Hb_000110_190 0.08851802 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
13 Hb_008484_010 0.0899420811 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
14 Hb_000086_440 0.0903406296 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
15 Hb_008511_020 0.0916973701 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
16 Hb_000990_090 0.0921778975 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
17 Hb_000579_240 0.0950249414 - - phosphatidylinositol transporter, putative [Ricinus communis]
18 Hb_005227_010 0.0950682726 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
19 Hb_000056_130 0.0954235088 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
20 Hb_000022_020 0.0967902768 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]

Gene co-expression network

sample Hb_000004_030 Hb_000004_030 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_000264_350--Hb_000960_040 Hb_000579_240 Hb_000579_240 Hb_000264_350--Hb_000579_240 Hb_002675_030 Hb_002675_030 Hb_000264_350--Hb_002675_030 Hb_000183_050 Hb_000183_050 Hb_000264_350--Hb_000183_050 Hb_001821_150 Hb_001821_150 Hb_000264_350--Hb_001821_150 Hb_008511_020 Hb_008511_020 Hb_000960_040--Hb_008511_020 Hb_000667_030 Hb_000667_030 Hb_000960_040--Hb_000667_030 Hb_000960_040--Hb_002675_030 Hb_010294_010 Hb_010294_010 Hb_000960_040--Hb_010294_010 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_000345_360 Hb_000345_360 Hb_041828_010--Hb_000345_360 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_002391_290--Hb_001862_140 Hb_000990_090 Hb_000990_090 Hb_002391_290--Hb_000990_090 Hb_000110_190 Hb_000110_190 Hb_002391_290--Hb_000110_190 Hb_002391_290--Hb_000345_360 Hb_001677_080 Hb_001677_080 Hb_002391_290--Hb_001677_080 Hb_009529_030 Hb_009529_030 Hb_004659_020--Hb_009529_030 Hb_017295_010 Hb_017295_010 Hb_004659_020--Hb_017295_010 Hb_002785_050 Hb_002785_050 Hb_004659_020--Hb_002785_050 Hb_002248_110 Hb_002248_110 Hb_004659_020--Hb_002248_110 Hb_002273_120 Hb_002273_120 Hb_004659_020--Hb_002273_120 Hb_001862_140--Hb_000110_190 Hb_001862_140--Hb_001677_080 Hb_001862_140--Hb_000990_090 Hb_012340_070 Hb_012340_070 Hb_001862_140--Hb_012340_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11153 2.34241 2.79296 5.36059 4.66019 5.60833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45412 1.28292 2.62737 4.53592 5.57214

CAGE analysis