Hb_000780_190

Information

Type transcription factor
Description TF Family: Orphans
Location Contig780: 213923-226793
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16260g
description POPTRDRAFT_775135; hypothetical protein
nr
ID XP_012081431.1
description PREDICTED: histidine kinase 2 [Jatropha curcas]
swissprot
ID Q9C5U2
description Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
trembl
ID A0A067KDH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18473 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine kinase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57923: 214092-214258 , PASA_asmbl_57925: 223488-225279 , PASA_asmbl_57926: 225578-226294 , PASA_asmbl_57927: 226299-226782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_190 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
2 Hb_000261_100 0.0695562099 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
3 Hb_000252_050 0.0769062334 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
4 Hb_041828_010 0.0780207294 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
5 Hb_012760_100 0.0800274818 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
6 Hb_000004_030 0.082569706 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
7 Hb_004701_050 0.0837260773 - - alpha1 family protein [Populus trichocarpa]
8 Hb_000362_150 0.0879788027 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
9 Hb_001109_060 0.0884925424 - - amino acid transporter, putative [Ricinus communis]
10 Hb_000183_050 0.0893029962 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
11 Hb_000086_440 0.0901177382 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
12 Hb_007441_130 0.0904713807 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_017966_020 0.0905581376 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
14 Hb_000345_360 0.0911063087 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
15 Hb_000640_100 0.0918534635 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000035_410 0.0922370312 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
17 Hb_004223_290 0.0935039503 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
18 Hb_009193_120 0.0937956773 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
19 Hb_056691_060 0.0947162338 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
20 Hb_000062_020 0.0950869861 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000780_190 Hb_000780_190 Hb_000261_100 Hb_000261_100 Hb_000780_190--Hb_000261_100 Hb_000252_050 Hb_000252_050 Hb_000780_190--Hb_000252_050 Hb_041828_010 Hb_041828_010 Hb_000780_190--Hb_041828_010 Hb_012760_100 Hb_012760_100 Hb_000780_190--Hb_012760_100 Hb_000004_030 Hb_000004_030 Hb_000780_190--Hb_000004_030 Hb_004701_050 Hb_004701_050 Hb_000780_190--Hb_004701_050 Hb_000284_230 Hb_000284_230 Hb_000261_100--Hb_000284_230 Hb_000035_410 Hb_000035_410 Hb_000261_100--Hb_000035_410 Hb_000261_100--Hb_004701_050 Hb_000183_050 Hb_000183_050 Hb_000261_100--Hb_000183_050 Hb_004109_370 Hb_004109_370 Hb_000261_100--Hb_004109_370 Hb_021374_010 Hb_021374_010 Hb_000252_050--Hb_021374_010 Hb_000227_220 Hb_000227_220 Hb_000252_050--Hb_000227_220 Hb_011231_020 Hb_011231_020 Hb_000252_050--Hb_011231_020 Hb_000027_050 Hb_000027_050 Hb_000252_050--Hb_000027_050 Hb_000252_050--Hb_012760_100 Hb_003943_010 Hb_003943_010 Hb_000252_050--Hb_003943_010 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_041828_010--Hb_000004_030 Hb_000345_360 Hb_000345_360 Hb_041828_010--Hb_000345_360 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_003734_010 Hb_003734_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_089140_050 Hb_089140_050 Hb_004701_050--Hb_089140_050 Hb_162275_040 Hb_162275_040 Hb_004701_050--Hb_162275_040 Hb_010272_010 Hb_010272_010 Hb_004701_050--Hb_010272_010 Hb_004701_050--Hb_000035_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93603 3.13483 2.18223 4.15774 4.53783 5.29223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09452 1.62705 1.66807 3.8049 5.73722

CAGE analysis